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GitHub / Biodepot-LLC / workflows
Workflows made with Biodepot-workflow-builder
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Biodepot-LLC%2Fworkflows
Stars: 1
Forks: 5
Open Issues: 0
License: other
Language: C
Repo Size: 86.6 MB
Dependencies:
146
Created: over 3 years ago
Updated: over 2 years ago
Last pushed: 8 months ago
Last synced: 8 months ago
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Dependencies
DNA/GATK_germline_variant/widgets/GATK_germline_variant/MarkDuplicates/Dockerfiles/Dockerfile
docker
- biodepot/gatk 4.1.9.0__openjdk_8-jre-alpine__cb1b2f17 build
- alpine 3.12.1 build
DNA/GATK_germline_variant/widgets/GATK_germline_variant/archive_delete/Dockerfiles/Dockerfile
docker
- alpine 3.13.5 build
DNA/GATK_germline_variant/widgets/GATK_germline_variant/baserecalibrate/Dockerfiles/Dockerfile
docker
- broadinstitute/gatk 4.1.9.0 build
- debian bullseye-slim build
- biodepot/bwa-samtools 0.7.15__1.9.52__alpine_3.12 build
- biodepot/bwa-samtools 0.7.15__1.9.52__alpine_3.12 build
- alpine 3.13.2 build
- ubuntu 20.04 build
- broadinstitute/gatk 4.1.9.0 build
DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_db_import/Dockerfiles/Dockerfile
docker
- broadinstitute/gatk 4.1.9.0 build
DNA/GATK_germline_variant/widgets/GATK_germline_variant/gatk_genotypeGVCFs/Dockerfiles/Dockerfile
docker
- broadinstitute/gatk 4.1.9.0 build
- broadinstitute/gatk 4.1.9.0 build
- broadinstitute/gatk 4.1.9.0 build
DNA/GATK_germline_variant/widgets/GATK_germline_variant/gcloud_download/Dockerfiles/Dockerfile
docker
- gcr.io/google.com/cloudsdktool/cloud-sdk 277.0.0-alpine build
- alpine 3.12 build
- ubuntu 20.04 build
- openjdk 8-jre-alpine build
- mgibio/pindel v0.2.5b8 build
- debian buster-slim build
- alpine 3.12.1 build
- alpine 3.13.5 build
- broadinstitute/gatk3 3.6-0 build
- debian bullseye-slim build
- biodepot/bwa-samtools 0.7.15__1.9.52__alpine_3.12 build
- alpine 3.13.2 build
- ubuntu 20.04 build
- gcr.io/google.com/cloudsdktool/cloud-sdk 277.0.0-alpine build
- ubuntu 20.04 build
- broadinstitute/gatk3 3.6-0 build
- alpine 3.13.2 build
- alpine 3.13.2 build
- mgibio/pindel v0.2.5b8 build
- mgibio/pindel v0.2.5b8 build
- broadinstitute/gatk3 3.6-0 build
- broadinstitute/gatk3 3.6-0 build
- ensemblorg/ensembl-vep release_102.0 build
- adoptopenjdk/openjdk15 jdk-15.0.1_9-alpine build
- clearlinux latest build
- scratch latest build
- adoptopenjdk/openjdk15 jdk-15.0.1_9-alpine build
- openjdk 8-jre-alpine build
- mgibio/pindel v0.2.5b8 build
- debian buster-slim build
- alpine 3.12.1 build
- alpine 3.13.5 build
- broadinstitute/gatk3 3.6-0 build
- debian bullseye-slim build
- biodepot/bwa-samtools 0.7.15__1.9.52__alpine_3.12 build
- alpine 3.13.2 build
- ubuntu 20.04 build
- gcr.io/google.com/cloudsdktool/cloud-sdk 277.0.0-alpine build
- alpine 3.12 build
- ubuntu 20.04 build
- broadinstitute/gatk3 3.6-0 build
- alpine 3.13.2 build
- alpine 3.13.2 build
- mgibio/pindel v0.2.5b8 build
- mgibio/pindel v0.2.5b8 build
- broadinstitute/gatk3 3.6-0 build
- broadinstitute/gatk3 3.6-0 build
DNA/GDC_dna_seq_no_gen3/widgets/GDC_dna_seq_no_gen3/variant_effect_predictor/Dockerfiles/Dockerfile
docker
- ensemblorg/ensembl-vep release_102.0 build
- adoptopenjdk/openjdk15 jdk-15.0.1_9-alpine build
- clearlinux latest build
- scratch latest build
- adoptopenjdk/openjdk15 jdk-15.0.1_9-alpine build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/MarkDuplicates/Dockerfiles/Dockerfile
docker
- openjdk 8-jre-alpine build
- mgibio/pindel v0.2.5b8 build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/SomaticSniper/Dockerfiles/Dockerfile
docker
- debian buster-slim build
- alpine 3.12.1 build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/archive_delete/Dockerfiles/Dockerfile
docker
- alpine 3.13.5 build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/baserecalibrate/Dockerfiles/Dockerfile
docker
- broadinstitute/gatk3 3.6-0 build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/biobambam2/Dockerfiles/Dockerfile
docker
- debian bullseye-slim build
- biodepot/bwa-samtools 0.7.15__1.9.52__alpine_3.12 build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/downloadURL/Dockerfiles/Dockerfile
docker
- alpine 3.13.2 build
- ubuntu 20.04 build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/gcloud_download/Dockerfiles/Dockerfile
docker
- gcr.io/google.com/cloudsdktool/cloud-sdk 277.0.0-alpine build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/gen3_download/Dockerfiles/Dockerfile
docker
- alpine 3.12 build
- ubuntu 20.04 build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/indelrealigner/Dockerfiles/Dockerfile
docker
- broadinstitute/gatk3 3.6-0 build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/muse_call/Dockerfiles/Dockerfile
docker
- alpine 3.13.2 build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/muse_sump/Dockerfiles/Dockerfile
docker
- alpine 3.13.2 build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/pindel_biosamba/Dockerfiles/Dockerfile
docker
- mgibio/pindel v0.2.5b8 build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/pindel_config/Dockerfiles/Dockerfile
docker
- mgibio/pindel v0.2.5b8 build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/pindel_sort/Dockerfiles/Dockerfile
docker
- broadinstitute/gatk3 3.6-0 build
- broadinstitute/gatk3 3.6-0 build
- ensemblorg/ensembl-vep release_102.0 build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/varscan_somatic/Dockerfiles/Dockerfile
docker
- adoptopenjdk/openjdk15 jdk-15.0.1_9-alpine build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/vcf_to_maf/Dockerfiles/Dockerfile
docker
- clearlinux latest build
- scratch latest build
DNA/GDC_dna_seq_no_gen3_fast/widgets/GDC_dna_seq_no_gen3_fast/vs_mpileup/Dockerfiles/Dockerfile
docker
- adoptopenjdk/openjdk15 jdk-15.0.1_9-alpine build
- alpine 3.12.0 build
- debian buster-slim build
- alpine 3.12.1 build
- ubuntu 18.04 build
- alpine 3.12.0 build
- alpine 3.12.1 build
- debian buster-slim build
- ubuntu 14.04 build
- alpine 3.12.1 build
- alpine 3.12.1 build
- alpine 3.12.1 build
- alpine 3.12.1 build
- debian 8.11-slim build
- biodepot/star 2.6.0c__debian-8.11-slim__072918 build
- debian buster-slim build
- alpine 3.12.1 build
- ubuntu 18.04 build
- alpine 3.12.0 build
- alpine 3.12.1 build
- debian buster-slim build
- ubuntu 14.04 build
- alpine 3.12.1 build
- alpine 3.12.1 build
- alpine 3.12.1 build
- alpine 3.12.1 build
- debian 8.11-slim build
- biodepot/star 2.6.0c__debian-8.11-slim__072918 build
- debian buster-slim build
- alpine 3.12.1 build
- ubuntu 18.04 build
- alpine 3.12.0 build
- alpine 3.12.1 build
- debian buster-slim build
- ubuntu 14.04 build
- alpine 3.12.1 build
RNA/GDC_mRNA_multi_dr15/widgets/GDC_mRNA_multi_dr15/samtools_index/Dockerfiles/build/Dockerfile
docker
- alpine 3.12.1 build
- alpine 3.12.1 build
RNA/GDC_mRNA_multi_dr15/widgets/GDC_mRNA_multi_dr15/samtools_sort/Dockerfiles/build/Dockerfile
docker
- alpine 3.12.1 build
- debian 8.11-slim build
- biodepot/star 2.6.0c__debian-8.11-slim__072918 build
- debian buster-slim build
- alpine 3.12.1 build
- ubuntu 18.04 build
- alpine 3.12.0 build
- alpine 3.12.1 build
- debian buster-slim build
- ubuntu 14.04 build
- alpine 3.12.1 build