Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: exact-matching

bodeolukolu/Qmatey

Quantitative metagenomic alignment and taxonomic exact-matching

Language: Shell - Size: 434 MB - Last synced: 21 days ago - Pushed: 22 days ago - Stars: 6 - Forks: 1

CMU-SAFARI/GenStore

GenStore is the first in-storage processing system designed for genome sequence analysis that greatly reduces both data movement and computational overheads of genome sequence analysis by exploiting low-cost and accurate in-storage filters. Described in the ASPLOS 2022 paper by Mansouri Ghiasi et al. at https://people.inf.ethz.ch/omutlu/pub/GenStore_asplos22-arxiv.pdf

Language: C - Size: 2.26 MB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 12 - Forks: 0

Related Keywords
exact-matching 2 ssd 1 sequence-alignment 1 read-mapping 1 pre-alignment-filtering 1 near-data-processing 1 long-reads 1 in-storage-processing 1 hardware-accelerator 1 ftl 1 strain-level-profiling 1 shotgun-metagenomics 1 reduced-representation-sequencing 1 microbiome 1 metagenomics 1 its-sequence 1 compositional-correlation 1 bioinformatics 1 16s-seq 1