philips-software/latrend

An R package for clustering longitudinal datasets in a standardized way, providing interfaces to various R packages for longitudinal clustering, and facilitating the rapid implementation and evaluation of new methods

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cafferychen777/MicrobiomeStat

Track, Analyze, Visualize: Unravel Your Microbiome's Temporal Pattern with MicrobiomeStat

Language: R - Size: 15.7 MB - Last synced: about 24 hours ago - Pushed: 1 day ago - Stars: 24 - Forks: 3

alejandroh3005/longitudinal-data

Course repository for BIOST 540: Longitudinal and Multilevel Data Analysis (Spring 2024) with Dr. Gary Chan

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nt-williams/lmtp

:package: Non-parametric Causal Effects Based on Modified Treatment Policies :crystal_ball:

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scibiome/meteor

`MeTEor` is an R Shiny application that offers the possibility to explore longitudinal metabolomics data. For this purpose, a variety of statistical analysis and visualization methods are implemented in MeTEor to help the user to get a quick overview of the data.

Language: R - Size: 19.4 MB - Last synced: 7 days ago - Pushed: 7 days ago - Stars: 5 - Forks: 0

Causal-LDA/TrialEmulation

Language: R - Size: 14.9 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 7 - Forks: 3

mccarthy-m-g/alda

An R data package for the book "Applied longitudinal data analysis: Modeling change and event occurrence" by Singer and Willet (2003).

Language: R - Size: 8.69 MB - Last synced: 12 days ago - Pushed: 12 days ago - Stars: 0 - Forks: 1

lindgrengroup/longitudinal_primarycare

Scripts for assessing longitudinal quantitative traits in UKBIOBANK-linked primary care data

Language: R - Size: 785 KB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 0 - Forks: 0

RezaDastranj/PCA-GEE

Forecasting Mortality Rates: Unveiling Patterns with a PCA-GEE Approach

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stocnet/rsiena

An R package for Simulation Investigation for Empirical Network Analysis

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hharcolezi/multi-freq-ldpy

Multiple Frequency Estimation Under Local Differential Privacy in Python

Language: Python - Size: 15.3 MB - Last synced: 7 days ago - Pushed: 10 months ago - Stars: 38 - Forks: 4

rpsychologist/powerlmm

powerlmm R package for power calculations for two- and three-level longitudinal multilevel/linear mixed models.

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JeroenDMulder/RI-CLPM

The Random Intercept-Cross Lagged Panel Model with extensions. Code provided for Mplus and Lavaan (R).

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graemeleehickey/joineRML

R package for fitting joint models to time-to-event data and multivariate longitudinal data

Language: R - Size: 8.88 MB - Last synced: 20 days ago - Pushed: over 1 year ago - Stars: 30 - Forks: 11

sktime/sktime-dl

DEPRECATED, now in sktime - companion package for deep learning based on TensorFlow

Language: Python - Size: 1.32 MB - Last synced: 15 days ago - Pushed: 4 months ago - Stars: 599 - Forks: 83

jtimonen/lgpr

R-package for interpretable nonparametric modeling of longitudinal data using additive Gaussian processes. Contains functionality for inferring covariate effects and assessing covariate relevances. Various models can be specified using a convenient formula syntax.

Language: R - Size: 2.82 MB - Last synced: 6 days ago - Pushed: 7 months ago - Stars: 25 - Forks: 1

mshin77/2022ksse

Longitudinal analysis for single-ase experimental design meta-analyses: Using R (2022 한국특수교육학회 동계학술대회)

Language: SCSS - Size: 8.97 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

ctesta01/longitudinal_eda_talk

A presentation on exploratory data visualization for longitudinal data in R using dplyr and ggplot2

Language: SCSS - Size: 42.7 MB - Last synced: about 2 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

RANDCorporation/optic

optic: Simulation Tool for Causal Inference Using Longitudinal Data

Language: R - Size: 18.8 MB - Last synced: 26 days ago - Pushed: 9 months ago - Stars: 8 - Forks: 1

brandenberger/rem

R-package for relational event models (one- and two-mode networks)

Language: R - Size: 243 KB - Last synced: 2 months ago - Pushed: almost 4 years ago - Stars: 18 - Forks: 3

drizopoulos/Repeated_Measurements

Shiny App for Repeated Measurements Course

Language: HTML - Size: 51.1 MB - Last synced: about 2 months ago - Pushed: 4 months ago - Stars: 78 - Forks: 23

leifeld/btergm

Temporal Exponential Random Graph Models by Bootstrapped Pseudolikelihood

Language: R - Size: 729 KB - Last synced: 13 days ago - Pushed: about 2 months ago - Stars: 16 - Forks: 10

PEDALLab-UPenn/Public-Spending-on-Acute-and-Long-Term-Care-for-Alzheimer-s-and-Related-Dementias

Public spending on acute and long-term care for Alzheimer's disease and related dementias

Language: Stata - Size: 302 KB - Last synced: 3 months ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

tvaucher/youtube-viz

A YouTube longitudinal data visualization. COM-480 Data Visualization, EPFL, Spring 2020

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mrawle/ACBS-and-cognition-NSHD

Stata code for ACBS derivation and analysis on cognitive outcomes in NSHD, for paper: "Associations between midlife anticholinergic medication use and subsequent cognitive decline"

Language: Stata - Size: 37.1 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 1

cafferychen777/MicrobiomeStat-Shiny

A Shiny interface for the MicrobiomeStat R package, designed to facilitate analysis and visualization of microbiome data.

Language: R - Size: 1.1 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 1

gmiaslab/pyiomica

PyIOmica (pyiomica) is a Python package for omics analyses.

Language: Python - Size: 451 MB - Last synced: 4 months ago - Pushed: over 1 year ago - Stars: 15 - Forks: 5

solonkarapa/Master-thesis

Language: SAS - Size: 702 KB - Last synced: 6 months ago - Pushed: over 7 years ago - Stars: 0 - Forks: 0

LamineTourelab/Drug-discovery

I am working on the discovery of new potential therapeutic tagets using Machine learning on multi-omics data.

Size: 576 KB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 3 - Forks: 0

chengl7/LonGP

Gaussian process regression + automatical model selection for logitudinal -omics data

Language: MATLAB - Size: 56.4 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 19 - Forks: 4

goshevs/pchained

Stata command for imputation in longitudinal data (including imputation of scales and Plumpton-style chained imputation)

Language: Stata - Size: 159 KB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

hlennon/LCTMtools

Latent Class Trajectory Models: An R Package

Language: R - Size: 156 MB - Last synced: 7 months ago - Pushed: over 1 year ago - Stars: 21 - Forks: 14

madelinecraft/Relationship-Between-Childhood-Trauma-and-Cortisol

This project explores the relationship between adverse childhood experiences and cortisol, finding that adverse childhood experiences predict dysregulated daily cortisol rhythms.

Language: SAS - Size: 1.2 MB - Last synced: 7 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 0

rachitsaluja/UCSF-ALPTDG-benchmarks

nnUNet benchmarks for The University of California San Francisco Adult Longitudinal Post-Treatment Diffuse Glioma (UCSF-ALPTDG) dataset.

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pmlandwehr/mefi-analytics

Various analyses of the MetaFilter Infodump

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aorliche/ukb-longitudinal-smt-vis

Finding of increased Somatomotor-Visual functional connectivity in the UKB longitudinal cohort

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m-clark/mixed-models-growth-curves-simulation

Raw files for a document simulating models for longitudinal data (mixed models and growth curve models).

Language: R - Size: 734 KB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 5 - Forks: 3

mspreafico/BO06-LOTox

Longitudinal Latent Overall Toxicity (LOTox) profiles in osteosarcoma: a new taxonomy based on latent Markov models.

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Califrais/flash

A generalized joint model for high-dimensional multivariate longitudinal data and censored durations

Language: Jupyter Notebook - Size: 45 MB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 7 - Forks: 3

mdbrown/partlyconditional

R package to fit partly conditional Cox and logistic models

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xinkai-zhou/MixedModelsBLB.jl

A Julia package for analyzing massive longitudinal data using Linear Mixed Models (LMMs) through the Bag of Little Bootstrap (BLB) method.

Language: Julia - Size: 908 KB - Last synced: 10 months ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0

samantha-bothwell/BIOS6643_FinalProject

Final project for longitudinal data analysis. Models change in weight over time with a linear mixed model.

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bhogend1/sic1

SIC Basic programming for longitudinal data in Stata

Language: Stata - Size: 481 KB - Last synced: 10 months ago - Pushed: about 3 years ago - Stars: 0 - Forks: 1

graemeleehickey/joineR

R package for fitting joint models to time-to-event and longitudinal data

Language: R - Size: 1.47 MB - Last synced: 6 months ago - Pushed: over 1 year ago - Stars: 15 - Forks: 7

hharcolezi/LOLOHA

Repository for the EDBT'23 paper "Frequency Estimation of Evolving Data Under Local Differential Privacy".

Language: Python - Size: 4.83 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 9 - Forks: 0

YuKersha/Stability-of-School-Academic-Perfomance-Longitudinal-Case

This research project is focused on the analysis of the academic performance of high school graduates in the Tyumen region from 2015 to 2019

Size: 3.77 MB - Last synced: 12 months ago - Pushed: 12 months ago - Stars: 0 - Forks: 0

ELI-Data-Mining-Group/PELIC-dataset

The University of Pittsburgh English Language Institute Corpus (PELIC) dataset

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hharcolezi/OpenMSFIMU

An open dataset of human mobility.

Size: 2.17 MB - Last synced: 4 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

graemeleehickey/comprisk

Comparison of joint models for competing risks and longitudinal data

Language: C - Size: 86.9 KB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 8 - Forks: 4

NIH-CARD/AlignedUMAP-BiomedicalData

Aligned-UMAP for longitudinal datasets analysis in biomedical research

Language: Jupyter Notebook - Size: 42.4 MB - Last synced: 12 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 1

jamieyap/CountSMART

This repository contains code to estimate sample size needed to compare dynamic treatment regimens using longitudinal count outcomes from a Sequential Multiple Assignment Randomized Trial (SMART).

Language: R - Size: 408 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 1

growthcharts/brokenstick

Broken Stick Model for Irregular Longitudinal Data

Language: R - Size: 76.4 MB - Last synced: 9 months ago - Pushed: about 1 year ago - Stars: 6 - Forks: 3

junyzhou10/clusterMLD

Clustering longitudinal data with potential sparse, irregular observations, multiple outcomes, and unbalanced cluster sizes

Language: R - Size: 2.14 MB - Last synced: 11 months ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

focardozom/ChessOlympiad22

Chess Olympiad Dataset 2022

Language: R - Size: 1.44 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

basiralab/4D-FED-GNN

Federated time-dependent graph evolution prediction with missing timepoints.

Language: Python - Size: 55.7 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 2 - Forks: 1

alek9z/dataMole

A Python based graphical tool to preprocess tabular datasets

Language: Python - Size: 8.3 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

kathoffman/swimmer-plots

Slides for my R/Medicine 2022 talk, "Making Swimmer Plots for Longitudinal Data using {ggplot}".

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alexwky/LatentClassJM

A general model for the joint analysis of multivariate longitudinal data and survival time

Language: R - Size: 198 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

imalenica/medltmle

R/medltmle: Estimation and Inference for Natural Mediation Effect in Longitudinal Data

Language: R - Size: 208 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 8 - Forks: 3

juditkisistok/gglongi

A ggplot2-based R package for visualizing longitudinal patient data and integrated clinical events in a user-friendly and customizable manner.

Language: R - Size: 4.82 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 0

aritzLizoain/Analyzing-schizophrenia

Analysis of the evolution of prevalence of thought disorders

Language: R - Size: 623 KB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

alexanderrobitzsch/STARTS

Functions for the STARTS Model.

Language: R - Size: 547 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 0

MahdiNouraie/Insomnia

Supporting code for my project on evaluation of effectiveness of a new drug on Insomnia by longitudinal models, using R

Language: R - Size: 9.77 KB - Last synced: 11 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

johannesuhl/sequential_clustering_viz

Effectively visualizing cluster flows and sizes for sequential cluster analyses using matplotlib.

Language: Python - Size: 3.13 MB - Last synced: 12 months ago - Pushed: over 3 years ago - Stars: 1 - Forks: 0

avallecam/hemogr

Analysis code for the manuscript "Hematological profiles in patients infected with malaria in an endemic area of ​​Peru"

Language: R - Size: 83 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0

junyzhou10/uReMix_R Fork of fchamroukhi/uReMix_R

Unsupervised REgression MIXtures (uReMix)

Size: 814 KB - Last synced: 11 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0

wspagnola/path_study

Visualization and Analyses of PATH (Population Assessment of Tobacco & Health) Survey data

Language: Stata - Size: 3.15 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

pjsudharshan/Alzheimer_Disease_Prediction

Language: Jupyter Notebook - Size: 5.84 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 1 - Forks: 0

ellenhamaker/RI-CLPM

This repository has been transferred to jeroendmulder.github.io/RI-CLPM for easier maintenance. The Github Pages automatically redirects to the new Github Page.

Size: 1.99 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 11 - Forks: 6

Kin-Wang/longitudinal

longitudinal data analysis for public health

Size: 112 KB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

lifecourse/DataCleaning

Handy data cleaning code relevant to LifeCourse cohorts

Language: Stata - Size: 9.77 KB - Last synced: 10 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

SimonBussy/redcvo

Biological and vital parameters trajectories visualization tool

Language: Jupyter Notebook - Size: 34.1 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 2 - Forks: 0

johannesuhl/multivariate_trajectory_viz

Using "t-SNE trajectories" for integrated visualization of multi-dimensional longitudinal trajectory datasets.

Language: Python - Size: 416 KB - Last synced: 12 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

com-480-data-visualization/com-480-project-datavirus

A YouTube longitudinal data visualization

Language: Jupyter Notebook - Size: 12.4 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 0

happma/HRM

R package providing statistical tests for high-dimensional repeated measures or split-plot designs.

Language: R - Size: 1.22 MB - Last synced: about 2 months ago - Pushed: over 4 years ago - Stars: 0 - Forks: 0

williazo/ggplot.spaghetti

Function for creating time-series plots using ggplot. Updated from legacy project r-ggplotspaghetti

Language: R - Size: 1.73 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 1 - Forks: 0

ZWang-Lab/LSRAT

R package for retrospective variant-set testing for longitudinal traits in genome-wide association studies

Language: R - Size: 116 KB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 0 - Forks: 0

trislett/simcosinor

Simulations for the cosinor model

Language: Python - Size: 1.51 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0

V-Talbot/Cystic-Fibrosis-research-analysis

Visualization of world-class repeated measures microbiome data from the lungs of children with Cystic Fibrosis, with wide-ranging applications to other longitudinal microbiome data.

Language: OpenEdge ABL - Size: 8.28 MB - Last synced: 12 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

graemeleehickey/FLHR627

Biostatistics PGR Development Course FLHR 627

Language: R - Size: 26.7 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

karchjd/gppm

Implementation of Gaussian Process Panel Modeling in R

Language: R - Size: 5.5 MB - Last synced: 7 months ago - Pushed: over 2 years ago - Stars: 3 - Forks: 4

josemonteiro/tDBN

Language: Java - Size: 445 KB - Last synced: about 1 year ago - Pushed: almost 6 years ago - Stars: 5 - Forks: 3

graemeleehickey/davis

Data from Davis (2002)

Language: PostScript - Size: 2.53 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 0 - Forks: 0