GitHub topics: linkage-mapping
AmirUCR/MSTmap-Python
A Python wrapper for MSTmap and its web-server https://mstmap.org
Language: C++ - Size: 12 MB - Last synced at: 1 day ago - Pushed at: 1 day ago - Stars: 0 - Forks: 1
pdimens/LepWrap
A pipeline to use Lep-Map3 to create linkage maps and LepAnchor for anchoring and orienting genome assemblies with said linkage maps.
Language: Perl - Size: 9.73 MB - Last synced at: 2 months ago - Pushed at: over 1 year ago - Stars: 13 - Forks: 1
alethere/SmoothDescent
Repository of SmoothDescent R package. Smooth Descent is a map-cleaning algorithm that can calculate identity by descent probabilities and correct genotyping errors based on marker maps.
Language: R - Size: 6.35 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 5 - Forks: 0
simhayn/basil_mapping
Genetic mapping and QTL analysis of basil
Size: 58.3 MB - Last synced at: about 1 month ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
mschemmel/gmap
An R package to visualize genetic maps.
Language: R - Size: 623 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 2
tomkurowski/vcf2loc
VCF to JoinMap loc (variant-to-marker) conversion tool
Language: Python - Size: 33.2 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 1
Cristianetaniguti/Reads2Map
WDL workflows to build genetic maps from sequencing reads
Language: WDL - Size: 167 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 6 - Forks: 0
mtekman/linkage-converter 📦
Converts between linkage output formats {Genehunter, Merlin, Simwalk, Swiftlink} → Allegro
Language: Python - Size: 13.7 KB - Last synced at: over 1 year ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
CNuge/phase-imputation
This program leverages zero recombination clusters and their relative positions on a linkage group to impute phases for missing data with high fidelity.
Language: Python - Size: 25.4 KB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
