Ecosyste.ms: Repos

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GitHub topics: arabidopsis

Repositories

gauravcodepro/tairaccession

tairaccession python package for interaction with tair and analyzing arabidopsis genome.

Language: Python - Size: 39.2 MB - Last synced: about 6 hours ago - Pushed: about 6 hours ago - Stars: 1 - Forks: 0

jonasoh/spiro

SPIRO is a Smart Plate Imaging Robot

Language: Python - Size: 21 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 7 - Forks: 7

BioAnalyticResource/eFP-Seq_Browser

An RNA-Seq data exploration tool that shows read map coverage of a gene of interest along with a coloured "electronic fluorescent pictographic" (eFP) based on its RPKM expression level.

Language: HTML - Size: 76.2 MB - Last synced: 4 days ago - Pushed: 4 days ago - Stars: 12 - Forks: 7

BioAnalyticResource/ePlant_Plant_eFP

A data visualization tool to display tissue expression data for Arabidopsis thaliana

Language: JavaScript - Size: 6.32 MB - Last synced: 22 days ago - Pushed: 5 months ago - Stars: 3 - Forks: 0

gauravcodepro/arabidopsis-maf-cap-accessions

arabidopsis-maf-cap-accessions. genome extraction, alignments, visualization, phylogenomics, ancestral tree

Language: HTML - Size: 42.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

gauravcodepro/arabidopsis-api-tair

this repository contains a function which will make your access to tair datasets easier for the arabidopsis research. Run this function and it will run and download the arabidopsis datasets and make the required analysis. It will make all the dictionary with nested lists and tuples which will provide a easy access to the tair dataframe

Language: Python - Size: 10.4 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 0 - Forks: 0

tair/ifad-backend

Interactive Functional Annotations Dashboard

Language: TypeScript - Size: 12.3 MB - Last synced: 3 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 1

mishaploid/AA-GenomicPrediction

Genomic prediction of amino acid traits in Arabidopsis seeds

Language: HTML - Size: 196 MB - Last synced: 3 months ago - Pushed: about 1 year ago - Stars: 2 - Forks: 0

athieffry/Thieffry_et_al_2020_Plant_Cell

🌱🧬 Collection of scripts for the paper: 📑 "Characterization of Arabidopsis thaliana Promoter Bidirectionality and Antisense RNAs by Inactivation of Nuclear RNA Decay Pathways" (The Plant Cell 2020; PMID 32213639 🔗)

Language: R - Size: 8.28 MB - Last synced: 5 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

athieffry/Thieffry_et_al_2022_Plant_Cell

🌱🧬 Collection of scripts for the paper: "PAMP-triggered genetic reprogramming involves widespread alternative transcription initiation and an immediate transcription factor wave" (The Plant Cell 2022; PMID 35404429 🔗)

Language: R - Size: 70.3 KB - Last synced: 5 months ago - Pushed: almost 2 years ago - Stars: 1 - Forks: 1

Gregor-Mendel-Institute/SNPmatch

A simple python library to identify the most likely strain from the population

Language: Python - Size: 92.4 MB - Last synced: about 1 month ago - Pushed: 5 months ago - Stars: 9 - Forks: 5

Sweekwang/golabel

A website to explore biological relationships between Arabidopsis thailiana genetic characteristics.

Language: JavaScript - Size: 3.39 GB - Last synced: 9 months ago - Pushed: 9 months ago - Stars: 1 - Forks: 1

zouyinstein/hifisr

HiFi-SR is a Python-based pipeline for the detection of plant mitochondrial structural rearrangements based on the mapping of PacBio high-fidelity (HiFi) reads or Circular Consensus Sequencing (ccs) data, to a reference genome (i.e., the hypothetical master cycle DNA).

Language: Python - Size: 80.4 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 5 - Forks: 1