GitHub topics: mitochondrial-variants
ShujiaHuang/mitoquest
Human Mitochondrial sequencing data Analysis Toolkit. Fetching information like variants, heteroplasmy/homoplasmy, etc. on mitochondrial genome from sequencing data
Language: C - Size: 27.4 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 4 - Forks: 0
lmtani/wf-human-mito
Workflow for human mitochondria analysis
Language: Nextflow - Size: 31.3 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 9 - Forks: 0
asw0049/phdscripts
This repository will house the scripts used to analyze and represent genomic and temperature data for my dissertation.
Language: Shell - Size: 13.7 KB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0
mitoNGS/MToolBox
A bioinformatics pipeline to analyze mtDNA from NGS data
Language: Python - Size: 26.1 MB - Last synced at: over 1 year ago - Pushed at: about 4 years ago - Stars: 77 - Forks: 36
filcfig/PCP
PrecisionCallerPipeline (PCP) automatically takes Precision ID mtDNA Whole Genome Panel (Thermo Fisher Scientific, USA) FASTQ files and outputs BAM files correctly aligned to the rCRS.
Language: Shell - Size: 6.45 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
TLenfers/multispecies_mitochondrial_variant_analysis
This workflow performs a variant analysis on mitochondrial genomes using the bcftools variant caller. For human samples, the workflow also performs a variant analysis using mutserve.
Language: Python - Size: 901 KB - Last synced at: 3 months ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0
ammodramus/mope
Infer the dynamics of mitochondrial heteroplasmy during different life stages using population genetics and phylogenetics
Language: Python - Size: 652 KB - Last synced at: about 2 years ago - Pushed at: over 5 years ago - Stars: 5 - Forks: 0
jvandinter/MitoCallPipeline
A pipeline for mitochondrial mutation calling
Language: HTML - Size: 18.2 MB - Last synced at: almost 2 years ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 0
huruifeng/MitoX
MitoX: exploring mitochondrial variants and gene expressions from single cell sequencing assays
Language: Python - Size: 8.12 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
