GitHub topics: small-rna
nf-core/smrnaseq
A small-RNA sequencing analysis pipeline
Language: Nextflow - Size: 8.48 MB - Last synced at: 1 day ago - Pushed at: 2 days ago - Stars: 85 - Forks: 126
sfletc/scramAligner
The scramAligner pipeline is designer to align small RNA reads to references sequences with no mis-matches. There is no requirement for reference index building. The pipeline is ideally suited to analysis of siRNAs generated from transgenes or viruses. Scripts for visualising alignments are also provided
Language: Python - Size: 7.01 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 0 - Forks: 0
junchaoshi/sports1.1
Small non-coding RNA annotation Pipeline Optimized for rRNA- and tRNA-Derived Small RNAs
Language: Perl - Size: 16.8 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 47 - Forks: 16
weng-lab/umitools
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
Language: Python - Size: 16.6 MB - Last synced at: 25 days ago - Pushed at: almost 7 years ago - Stars: 15 - Forks: 4
foriin/Piccolo
A little script that looks for piRNA clusters based on small RNA library coverage
Language: C++ - Size: 2.46 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
YaoLab-Bioinfo/LIRBase
A comprehensive collection of long inverted repeats in 424 eukaryotic genomes
Language: R - Size: 456 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 16 - Forks: 2
cxli233/gamete-small-RNA
R Markdown files for analyses of rice small RNA, gene expression and DNA methylation
Size: 29.6 MB - Last synced at: 3 months ago - Pushed at: almost 6 years ago - Stars: 1 - Forks: 1
unique379r/cbs-mirseq
CBS-miRSeq: a robust comprehensive bioinformatics pipeline for microRNA expression profiling by next generation sequencing.
Language: Shell - Size: 4.19 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
rnai-bioinfo/small-rna-metavir
An automated independent of sequence similarity tool for viral sequences identification using RNA-seq metagenomics small RNA reads
Language: Jupyter Notebook - Size: 64.1 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
bhofmei/jbplugin-smallrna
JBrowse plugin that supports smallRNA alignments
Language: JavaScript - Size: 8.84 MB - Last synced at: over 2 years ago - Pushed at: about 6 years ago - Stars: 11 - Forks: 1
Ingefast/small_RNA_analyser
A pipeline to analyse small RNA expression using Illumina sequencing data
Language: R - Size: 3.82 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
seb-mueller/snakemake_sRNAseq
Snakemake workflow for processing small RNA-seq libaries
Language: Python - Size: 53.7 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0
eyay/smallseq
Pipeline to analyze small RNAs from single-cells
Language: Gnuplot - Size: 22.6 MB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 2 - Forks: 3
