GitHub topics: jbrowse
GMOD/jbrowse-components
Source code for JBrowse 2, a modern React-based genome browser
Language: TypeScript - Size: 214 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 234 - Forks: 66
GMOD/Apollo
Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.
Language: Groovy - Size: 176 MB - Last synced at: 11 days ago - Pushed at: about 1 month ago - Stars: 132 - Forks: 85
GMOD/jbrowse-jupyter
A python package for showing JBrowse views
Language: Python - Size: 6.45 MB - Last synced at: 12 days ago - Pushed at: over 1 year ago - Stars: 24 - Forks: 4
cagintunc/331_final_project
Introduction to Computational Biology Final Project
Language: Python - Size: 3.02 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
wrf/genomeGTFtools
convert various features into a GFF-like file for use in genome browsers
Language: Python - Size: 3.8 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 69 - Forks: 27
galaxy-genome-annotation/python-apollo
Python library for talking to Apollo API
Language: Python - Size: 798 KB - Last synced at: 9 days ago - Pushed at: about 1 year ago - Stars: 10 - Forks: 11
GMOD/jbrowse-plugin-quantseq
External JB2 plugin implementing a QuantitativeSequence track for displaying base-resolution models.
Language: TypeScript - Size: 445 KB - Last synced at: 9 days ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0
tripal/tripal_jbrowse
Drupal/Tripal: Drupal integration for GMOD JBrowse instances.
Language: PHP - Size: 3.64 MB - Last synced at: 19 days ago - Pushed at: about 1 year ago - Stars: 9 - Forks: 4
isubit/tripal_jbrowse_api
A Tripal module that exposes Chado as a JBrowse-compatible REST API
Language: PHP - Size: 41 KB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 1 - Forks: 1
isubit/tripal_downloads
Provides a content type for downloadable files that can optionally be used as JBrowse tracks
Language: PHP - Size: 38.1 KB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 0 - Forks: 1
agduncan94/jbrowse-docker
A JBrowse Docker image
Size: 6.84 KB - Last synced at: over 1 year ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 2
rpmarq/wbds_la_camp_projeto_final
Projeto elaborado para WBDS LA CAMP- Anotação do genoma da bactéria Clostridium botulinum com pyrodigal e prokka
Language: Jupyter Notebook - Size: 8.52 MB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
Yating-L/jbrowse-archive-creator
This Galaxy tool permits to prepare your files to be ready for assembly visualization on JBrowse.
Language: Python - Size: 1.84 MB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
bingbig/gtf2gff3
Convert gtf to gff3 for JBrowse
Language: Python - Size: 2.93 KB - Last synced at: over 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 1
cancerit/proportionalmultibw
JBrowse plugin to display multiple BigWig tracks as a stacked proportion
Language: JavaScript - Size: 1.09 MB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 3 - Forks: 1
Arabidopsis-Information-Portal/ComboTrackSelector
Plugin to allow the co-existence of the Hierarchical and Faceted Track Selectors in the GMOD JBrowse Genome Browser
Language: JavaScript - Size: 282 KB - Last synced at: about 1 year ago - Pushed at: about 6 years ago - Stars: 7 - Forks: 4
cancerit/cgpJBrowseToolkit
Holds publicly useful scripts and tools for JBrowse users and admins
Language: JavaScript - Size: 280 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 1
Arabidopsis-Information-Portal/CyverseRemoteTracks
JBrowse plugin enabling the ability to dynamically load tracks from data/configurations stored in the Cyverse Data Store
Language: JavaScript - Size: 268 KB - Last synced at: about 1 year ago - Pushed at: about 8 years ago - Stars: 1 - Forks: 0
bhofmei/jbplugin-methylation
JBrowse plugin for methylation related things
Language: JavaScript - Size: 13.2 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 12 - Forks: 2
bhofmei/jbplugin-smallrna
JBrowse plugin that supports smallRNA alignments
Language: JavaScript - Size: 8.84 MB - Last synced at: about 2 years ago - Pushed at: about 6 years ago - Stars: 11 - Forks: 1
galaxy-genome-annotation/dockerized-gmod-deployment
:whale::bar_chart::books: Galaxy + Apollo + Chado + Tripal + JBrowse + JBrowse REST API + PostGraphQL + JBrowse GraphQL Experiment all as a docker-compose.yml
Language: Python - Size: 594 KB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 5 - Forks: 9
elliothershberg/shiny-sars-cov-2
A simple Shiny app for visualizing Sars-CoV-2 data.
Language: R - Size: 20.5 KB - Last synced at: about 2 months ago - Pushed at: about 4 years ago - Stars: 3 - Forks: 0
LincolnSteinLab/icgc-viewer
A JBrowse plugin for viewing ICGC Data
Language: JavaScript - Size: 2.77 MB - Last synced at: 6 months ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 3
LincolnSteinLab/gdc-viewer
A JBrowse plugin for viewing GDC Data
Language: JavaScript - Size: 4.24 MB - Last synced at: 6 months ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 2
bhofmei/jbplugin-screenshot
JBrowse plugin that adds button which uses phantomJS to take browser screenshot
Language: JavaScript - Size: 6.45 MB - Last synced at: about 2 years ago - Pushed at: about 5 years ago - Stars: 7 - Forks: 3
milesroberts-123/convert-blast-to-bed
Convert the output of BLAST to a BED file format that's suitable for uploading to JBrowse.
Language: Python - Size: 19.5 KB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 1
Arabidopsis-Information-Portal/jbrowse Fork of GMOD/jbrowse
A modern genome browser built with JavaScript and HTML5.
Language: JavaScript - Size: 73.2 MB - Last synced at: about 1 year ago - Pushed at: almost 8 years ago - Stars: 2 - Forks: 3
Arabidopsis-Information-Portal/jbrowse-contrib
Configuration and miscellaneous support files for Araport JBrowse installation
Language: Shell - Size: 133 KB - Last synced at: about 1 year ago - Pushed at: about 7 years ago - Stars: 3 - Forks: 3
Arabidopsis-Information-Portal/SeqLighter
BioJS based Sequence Viewer plugin for the GMOD JBrowse genome browser
Language: JavaScript - Size: 16.5 MB - Last synced at: about 1 year ago - Pushed at: about 9 years ago - Stars: 4 - Forks: 0
Arabidopsis-Information-Portal/chromatin_states_to_jbrowse
ADAMA web-service wrapper to transform "Chromatin States" GFF3 data into JBrowse compatible JSON
Language: Python - Size: 1.66 MB - Last synced at: about 1 year ago - Pushed at: over 9 years ago - Stars: 0 - Forks: 0
Arabidopsis-Information-Portal/1001GenomesVariants
JBrowse plugin enabling the ability to enrich the 1001 Genomes Variants track with metadata from 1001genomes.org Master Accession List API
Language: JavaScript - Size: 13.7 KB - Last synced at: about 1 year ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0
Arabidopsis-Information-Portal/EnsemblVariants
JBrowse plugin enabling the ability to enrich the Ensembl Variants (VCF) track with metadata from rest.ensemblgenomes.org API
Language: JavaScript - Size: 2.31 MB - Last synced at: about 1 year ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0
Arabidopsis-Information-Portal/AraportJBPlugin
Custom JBrowse plugin to map JBrowse/Store/SeqFeature/REST to the Araport Adama API endpoints
Language: JavaScript - Size: 3.94 MB - Last synced at: about 1 year ago - Pushed at: almost 8 years ago - Stars: 0 - Forks: 0
Arabidopsis-Information-Portal/small_orfs_to_jbrowse
ADAMA web-service wrapper to transform "Translated small ORFs" GFF3 data (Hsu et al. 2016) into JBrowse compatible JSON
Language: Python - Size: 56.6 KB - Last synced at: about 1 year ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
bhofmei/jbplugin-nucdens
No longer actively developed...See README
Language: JavaScript - Size: 446 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 0
galaxy-genome-annotation/apollo-git-backup
Backup an apollo instance to a git repository
Language: Python - Size: 104 KB - Last synced at: about 1 year ago - Pushed at: almost 8 years ago - Stars: 1 - Forks: 0