GitHub topics: freebayes
USDA-VS/vSNP3
vSNP -- validate SNPs
Language: Python - Size: 5.82 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 8 - Forks: 2
cnr-ibba/nf-resequencing-mem
Nextflow resequencing pipeline with bwa-mem and freebayes
Language: Nextflow - Size: 2.66 MB - Last synced at: 22 days ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
USDA-VS/vSNP
vSNP -- validate SNPs
Language: Python - Size: 68.5 MB - Last synced at: 11 days ago - Pushed at: 8 months ago - Stars: 20 - Forks: 12
laura-budurlean/SV-calling-with-SpeedSeq
A workflow for using SpeedSeq to align and call SVs from WGS data
Language: Shell - Size: 15.6 KB - Last synced at: about 1 month ago - Pushed at: 8 months ago - Stars: 1 - Forks: 0
PulmonomicsLab/mcdr-mtb-standalone-v2
Multi-class classification of drug resistance in MTB clinical isolates
Language: Shell - Size: 5.45 MB - Last synced at: 12 months ago - Pushed at: 12 months ago - Stars: 0 - Forks: 0
brwnj/freebayes-nf
a better freebayes-parallel
Language: Nextflow - Size: 21.5 KB - Last synced at: about 2 months ago - Pushed at: over 4 years ago - Stars: 7 - Forks: 1
PulmonomicsLab/mcdr-mtb-standalone
Multi-class classification of drug resistance in MTB clinical isolates
Language: Shell - Size: 5.56 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
digo4/Clinical-Genomics
Here we are going to discuss variant calling on human datasets using GATK Best practices pipeline
Language: Shell - Size: 190 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
isugifNF/polishCLR
A nextflow pipeline for polishing CLR assemblies
Language: Nextflow - Size: 6.06 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 12 - Forks: 4
CarolinaPB/WUR_mapping-variant-calling
Short read mapping and variant calling
Language: Python - Size: 192 KB - Last synced at: about 2 years ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1
biodata-fun/course_material
This directory contains material that I've used in different courses
Size: 2.92 MB - Last synced at: about 2 years ago - Pushed at: over 4 years ago - Stars: 1 - Forks: 0
tycheleturner/exome_class
Codes for exome sequencing class being taught by Tychele N. Turner, Ph.D.
Language: R - Size: 7.62 MB - Last synced at: almost 2 years ago - Pushed at: over 7 years ago - Stars: 0 - Forks: 1
