GitHub topics: analysis-pipeline
seandavi/awesome-single-cell
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
Size: 1.43 MB - Last synced at: about 9 hours ago - Pushed at: 21 days ago - Stars: 3,369 - Forks: 1,016
tonyfischetti/assertr
Assertive programming for R analysis pipelines
Language: R - Size: 13.9 MB - Last synced at: 2 days ago - Pushed at: about 1 year ago - Stars: 480 - Forks: 34
AllenInstitute/ecephys_spike_sorting
Modules for processing extracellular electrophysiology data from Neuropixels probes
Language: Python - Size: 6.78 MB - Last synced at: 2 days ago - Pushed at: 9 months ago - Stars: 115 - Forks: 95
ynikitenko/lena
Lena is an architectural framework for data analysis
Language: Python - Size: 903 KB - Last synced at: 13 days ago - Pushed at: 19 days ago - Stars: 4 - Forks: 1
Replicon-genetics/rg_exploder_shared
Python code for generating synthetic sequence data: DNASEQ and RNASEQ reads for use as standards in genomics data analysis pipelines
Language: Python - Size: 209 MB - Last synced at: 24 days ago - Pushed at: 24 days ago - Stars: 0 - Forks: 0
sdss/mangadap
The MaNGA Data Analysis Pipeline
Language: Python - Size: 152 MB - Last synced at: 7 days ago - Pushed at: 5 months ago - Stars: 19 - Forks: 11
USDA-VS/vSNP3
vSNP -- validate SNPs
Language: Python - Size: 5.82 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 8 - Forks: 2
grailbio/reflow
A language and runtime for distributed, incremental data processing in the cloud
Language: Go - Size: 6.96 MB - Last synced at: about 2 months ago - Pushed at: over 1 year ago - Stars: 966 - Forks: 52
enormandeau/barque
eDNA metabarcoding pipeline
Language: Python - Size: 3.43 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 33 - Forks: 8
USDA-VS/vSNP
vSNP -- validate SNPs
Language: Python - Size: 68.5 MB - Last synced at: 20 days ago - Pushed at: 8 months ago - Stars: 20 - Forks: 12
1313e/PRISM
An alternative to MCMC for rapid analysis of models
Language: Python - Size: 9.46 MB - Last synced at: 10 days ago - Pushed at: almost 4 years ago - Stars: 46 - Forks: 9
JetBrains-Research/bitcode-tools
Gradle tools to analyze bitcode of a Kotlin/Native project
Language: Kotlin - Size: 167 KB - Last synced at: 30 days ago - Pushed at: about 1 year ago - Stars: 6 - Forks: 0
Mu-Sigma/analysis-pipelines
Enables data scientists to compose pipelines of analysis which consist of data manipulation, exploratory analysis & reporting, as well as modeling steps. Data scientists can use tools of their choice through an R interface, and compose interoperable pipelines between R, Spark, and Python.
Language: R - Size: 8.62 MB - Last synced at: 6 days ago - Pushed at: over 4 years ago - Stars: 28 - Forks: 1
genepi/cloudgene
A framework to build Software As A Service (SaaS) platforms for data analysis pipelines.
Language: Java - Size: 15.4 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 35 - Forks: 18
systemPipeR/SPatacseq
Workflow Template
Language: TeX - Size: 5.38 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
FOGSEC/snake Fork of R3dFruitRollUp/snake
snake - a malware storage zoo
Language: Shell - Size: 643 KB - Last synced at: over 1 year ago - Pushed at: over 6 years ago - Stars: 2 - Forks: 1
weng-lab/krews
KREWS Scientific Data Pipeline Framework
Language: Kotlin - Size: 1.89 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 0
CTLife/PipiDABS 📦
PipiDABS: A Comprehensive and User-Friendly Pipeline for Downstream DNA Methylation Analysis of High-throughput Bisulfite Sequencing Data.
Language: R - Size: 127 KB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 4 - Forks: 3
peitek/eyetracking-analyses
Collection of Python scripts for various eye-tracking analyses for our fMRI studies
Language: AGS Script - Size: 9.25 MB - Last synced at: over 1 year ago - Pushed at: almost 7 years ago - Stars: 0 - Forks: 0
mkongsore/BlipFinder
Analysis pipeline capable of searching for dark compact objects in the Milky Way through astrometric lensing in real or mock Gaia DR4 data.
Language: Jupyter Notebook - Size: 61.4 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 6 - Forks: 0
abhijeetsingh1704/AcetoScan
AcetoScan - Automated pipeline for the unsupervised analysis of FTHFS amplicon sequencing
Language: Shell - Size: 46.1 MB - Last synced at: 29 days ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 3
Stack-Breakthrough/jobs-data-analyzer
An easy-to-use tool for extracting insights from jobs data.
Language: JavaScript - Size: 4.13 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0
ahujaraman/spark_kafka_tweet_analysis
What people are tweeting about now, in your desired location? Live Streaming of Twitter Data to Spark and Tweet Analysis application on various trends Eg: Trending HashTags, Trending Mentions etc. Location based features supported.
Language: Python - Size: 140 KB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 6 - Forks: 4
memobc/memolab-psychophys-pipeline
Repository home of the Memo Lab's Psychophysiology Pipeline
Language: Matlab - Size: 49.8 KB - Last synced at: about 2 years ago - Pushed at: over 7 years ago - Stars: 1 - Forks: 2
danielmk/PatchSeq
An analysis pipeline for patch seq data, a combination of patch-clamp electrophysiology and single cell sequencing.
Language: Python - Size: 85.9 KB - Last synced at: 11 months ago - Pushed at: almost 4 years ago - Stars: 1 - Forks: 0
AgenttiX/cloc-action
GitHub action to count lines of code with CLOC
Language: Shell - Size: 6.84 KB - Last synced at: about 2 years ago - Pushed at: almost 5 years ago - Stars: 0 - Forks: 0
WormLabCaltech/alaska
Automated and friendly RNA-seq analysis (deprecated)
Language: Python - Size: 52.3 MB - Last synced at: about 2 years ago - Pushed at: almost 6 years ago - Stars: 6 - Forks: 0
vrrenske/spotprocessR
code used in van Raaphorst, Kjos & Veening (2017), Chromosome segregation drives division site selection in Streptococcus pneumoniae, PNAS
Language: R - Size: 32.2 KB - Last synced at: about 2 years ago - Pushed at: about 7 years ago - Stars: 2 - Forks: 1
