GitHub topics: atac-seq-pipeline
CCBR/ASPEN
CCBR pipeline for preliminary QC, peak calling, differential chromatin accessibility analysis with ATACseq datasets 🌲
Language: Shell - Size: 620 MB - Last synced at: 4 days ago - Pushed at: 5 days ago - Stars: 0 - Forks: 0
jayelazuno/PhD_Thesis_Workbench
This repository to dedicated to notes, scripts, and general miscellaneous items I take during my PhD thesis in computational genetics, gene regulatory evolution
Language: HTML - Size: 2.03 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
tobiasrausch/ATACseq
Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)
Language: Shell - Size: 330 KB - Last synced at: 10 days ago - Pushed at: over 1 year ago - Stars: 75 - Forks: 36
N3ha-Rao/ATAC-seq-analysis-pipeline
Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.
Language: HTML - Size: 4.45 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0
utdal/ATACSeq-NextFlow-Pipeline
This is an automated workflow pipeline for analyzing bulk ATAC-seq data, implemented primarily in bash scripts, and wrapped in a NextFlow workflow.
Language: Shell - Size: 340 KB - Last synced at: about 1 month ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0
sebastian-gregoricchio/snakeATAC
Snakemake pipeline for analysis and normalization of ATAC-seq data starting from fastq.gz files.
Language: Python - Size: 4.72 MB - Last synced at: 8 months ago - Pushed at: 8 months ago - Stars: 2 - Forks: 0
macs3-project/genomics-analysis-pipelines Fork of taoliulab/genomics-analysis-pipelines
Pipeline codes for analyzing various genomics datasets based on MACS3
Language: Python - Size: 1.47 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 7 - Forks: 5
LupienLab/pipeline-chromatin-accessibility
Instructions on how to perform chromatin accessibility data pre-processing and analyses (focusing on bulk ATAC-seq)
Language: Python - Size: 52.7 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0
jawa23bio/ATAC-Seq
Comprehensive analysis pipeline for ATAC-seq data including QC, alignment, peak calling, annotation, motif analysis, and gene enrichment. Delivers key insights and reproducible results for chromatin accessibility studies.
Language: HTML - Size: 4.91 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 1 - Forks: 0
systemPipeR/SPatacseq
Workflow Template
Language: TeX - Size: 5.38 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0
zqfang/snakeflow
bioinfo workflow based on snakemake
Language: Python - Size: 7.94 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 7 - Forks: 7
Taiji-pipeline/Taiji
All-in-one analysis pipeline
Language: Haskell - Size: 4.05 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 31 - Forks: 8
StathopoulosLab/Stathopoulos_Lab_Pipelines
A comprehensive source for Stathopoulos lab code generated and used in data analysis.
Language: Shell - Size: 40 KB - Last synced at: over 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0
cellgeni/cellatac
Sanger Cellular Genetics single-cell ATAC-seq pipeline.
Language: Nextflow - Size: 207 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 11 - Forks: 5
ATA82/ATAC_Reprogramming_of_Fibroblasts
ATAC-Seq analysis. (Ali T. Abdallah)
Language: R - Size: 39.2 MB - Last synced at: over 1 year ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0
mireia-bioinfo/pipelineNGS
Pipeline for processing epigenomic NGS data.
Language: R - Size: 8.57 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 2
