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GitHub / Taiji-pipeline / Taiji
All-in-one analysis pipeline
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/Taiji-pipeline%2FTaiji
Stars: 31
Forks: 8
Open Issues: 11
License: bsd-3-clause
Language: Haskell
Repo Size: 4.05 MB
Dependencies:
45
Created: almost 7 years ago
Updated: 9 months ago
Last pushed: almost 2 years ago
Last synced: 7 months ago
Topics: atac-seq-pipeline, rna-seq-pipeline, single-cell-atac-seq, single-cell-rna-seq, transcriptional-regulatory-network
Files
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Readme
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Dependencies
Taiji.cabal
hackage
- IntervalMap *
- SciFlow >=0.7.2
- SciFlow >=0.7.1
- SciFlow-app *
- SciFlow-remote *
- Taiji *
- Taiji-ATAC-seq *
- Taiji-RNA-seq *
- Taiji-fusion *
- Taiji-scATAC-seq >=0.2.0
- Taiji-scATAC-seq *
- Taiji-scRNA-seq *
- Taiji-utils >=0.1.1
- Taiji-utils *
- aeson *
- base *
- base >=4.7 && <5
- bbi *
- bio-experiments *
- bio-pipelines *
- bio-pipelines >=0.1.2
- bioinformatics-toolkit >=0.9.5
- bytestring *
- case-insensitive *
- clustering *
- conduit *
- containers *
- data-default *
- data-default-class *
- data-ordlist *
- deepseq *
- double-conversion *
- hashable *
- haskell-igraph >=0.7.1
- matrices *
- mtl *
- singletons >=2.5
- statistics >=0.14.0
- temporary *
- text *
- unordered-containers *
- vector *
- vector-algorithms *
- yaml *
- zlib *