nf-core/tbanalyzer

An nf-core (meta) pipeline for analysis of different members of Mycobacterium tuberculosis complex.

Language: Nextflow - Size: 298 KB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 3 - Forks: 0

USDA-VS/vSNP3

vSNP -- validate SNPs

Language: Python - Size: 5.34 MB - Last synced: 25 days ago - Pushed: 26 days ago - Stars: 2 - Forks: 1

USDA-VS/vSNP

vSNP -- validate SNPs

Language: Python - Size: 68.5 MB - Last synced: 23 days ago - Pushed: over 1 year ago - Stars: 19 - Forks: 12

PathoGenOmics-Lab/mycolorsTB

R Color package for Mycobacterium tuberculosis complex

Language: R - Size: 684 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 0

jananiravi/psp-mtb

Phage-shock-protein (psp) system in M. tuberculosis

Size: 9.77 MB - Last synced: 3 months ago - Pushed: over 5 years ago - Stars: 0 - Forks: 0

MaryAgopian/Variant_Barcoding_M.orygis

Variant barcoding pipeline using single nucleotide polymorphisms (SNPs) for the generation of M. orygis standardised markers for diagnostic and epidemiological use.

Language: R - Size: 55.7 KB - Last synced: 3 months ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

dbespiatykh/RDscan

A snakemake workflow for regions of difference discovery in Mycobacterium tuberculosis complex (MTBC) samples

Language: Python - Size: 79.4 MB - Last synced: 4 months ago - Pushed: 4 months ago - Stars: 3 - Forks: 1

rahimrajwani/MIRU-profiler

Language: Shell - Size: 15.8 MB - Last synced: 8 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 3

dbespiatykh/tblg

A command-line tool to genotype Mycobacterium tuberculosis lineage from a VCF file

Language: Python - Size: 40 KB - Last synced: 2 months ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

dbespiatykh/TB-gen

Web-app to explore Mycobacterium tuberculosis complex

Language: Python - Size: 43.6 MB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 1 - Forks: 1