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GitHub / PavlidisLab / rnaseq-pipeline
RNA-seq pipeline for raw sequence alignment and transcript/gene quantification.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/PavlidisLab%2Frnaseq-pipeline
Stars: 19
Forks: 4
Open Issues: 37
License: unlicense
Language: Python
Repo Size: 43.5 MB
Dependencies:
15
Created: over 8 years ago
Updated: 6 days ago
Last pushed: 6 days ago
Last synced: 6 days ago
Commit Stats
Commits: 491
Authors: 12
Mean commits per author: 40.92
Development Distribution Score: 0.422
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/PavlidisLab/rnaseq-pipeline
Topics: alignment, bash, bioinformatics, bioinformatics-pipeline, fastqc, gene-expression, genomics, illumina, ngs, ngs-analysis, quantification, rna-seq, rsem, splice-aware, spliced-alignment, star, stringtie, transcriptomics
Files
Dependencies
- actions/checkout v2 composite
- actions/setup-python v2 composite