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GitHub / ShujiaHuang / basevar

This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially for NIPT data

JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ShujiaHuang%2Fbasevar

Stars: 20
Forks: 7
Open Issues: 3

License: None
Language: Python
Repo Size: 42.2 MB
Dependencies: 10

Created: about 5 years ago
Updated: about 2 months ago
Last pushed: about 2 months ago
Last synced: about 2 months ago

Commit Stats

Commits: 478
Authors: 5
Mean commits per author: 95.6
Development Distribution Score: 0.368
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/ShujiaHuang/basevar

Topics: basevar, bioinformatics, cython, genomics, large-scale, ngs, nipt, python

Files

Readme

Dependencies

requirements.txt pypi

Cython >=0.29.6
Logbook >=1.4.3
numpy >=1.15.4
scikit-learn >=0.20.2
scipy >=1.1.0

setup.py pypi

Cython >=0.29.6
Logbook >=1.4.3
numpy >=1.15.4
scikit-learn >=0.20.2
scipy >=1.1.0