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GitHub / 10adavis / DESeq2_fGSEA_Flow
This repo is a template for running differential gene expression analysis of RNA-seq count data followed by gene set enrichment analysis. This workflow is run in R using Rmarkdown. It is based around the popular R packages, DESeq2, fGSEA, and others.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/10adavis%2FDESeq2_fGSEA_Flow
Stars: 1
Forks: 0
Open Issues: 9
License: None
Language: R
Repo Size: 7.22 MB
Dependencies: pending
Created: over 2 years ago
Updated: 8 months ago
Last pushed: 8 months ago
Last synced: 8 months ago
Topics: bioinformatics, bioinformatics-analysis, bioinformatics-pipeline, rna-seq-pipeline, rna-sequencing, rnaseq, rnaseq-analysis