Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: circrnas
jakobilab/bioinfo-scripts
Assorted scripts in Perl, Bash, R and whatsoever directly from a bioinformatician's scripts/ folder
Language: Shell - Size: 170 KB - Last synced: over 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
iprada/Circle-Map
A method for circular DNA detection based on probabilistic mapping of ultrashort reads
Language: Python - Size: 3.75 MB - Last synced: 21 days ago - Pushed: almost 2 years ago - Stars: 60 - Forks: 18
haichengyi/bioseq2vec
BioSeq2vec: learning deep representation of biological sequences using LSTM Encoder-Decoder
Language: Python - Size: 80.3 MB - Last synced: 8 months ago - Pushed: about 3 years ago - Stars: 1 - Forks: 4
egaffo/CirComPara
:microscope: A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data
Language: R - Size: 16 MB - Last synced: 8 months ago - Pushed: almost 4 years ago - Stars: 14 - Forks: 11
Tammimies-Lab/circRNA_neuro
Manuscript data and code repository
Size: 21.5 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
annadalmolin/CircFusion
CircFusion is a new software tool to detect linear fusions and f-circRNAs from RNA-seq data, both in samples where the fusion breakpoint is known and in a discovery mode. CircFusion can detect chimeric transcripts even in the presence of multiple translocation breakpoints, both for the main and unbalanced reciprocal fusion, which are quite common in malignant cells. The CircFusion output includes the list of the f-circRNAs and linear RNAs identified for each translocation, and overall for each sample, and other details about the read alignment.
Language: Shell - Size: 1.15 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 0 - Forks: 0
ShaominYang/SARS-CoV-2-SARS-CoV-and-MERS-CoV-encode-circular-RNAs-of-spliceosome-independent-origin
Bioinformatic identification and quantification of circRNAs encoded by SARS-CoV-2
Size: 23.1 MB - Last synced: about 1 month ago - Pushed: about 2 years ago - Stars: 2 - Forks: 0
egaffo/circompara-docker
:whale: Docker image for CirComPara
Language: Dockerfile - Size: 6.84 KB - Last synced: over 1 year ago - Pushed: about 4 years ago - Stars: 2 - Forks: 0