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GitHub / uc-bd2k / GREP2
GEO RNA-seq Experiments Processing Pipeline
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/uc-bd2k%2FGREP2
Stars: 20
Forks: 10
Open issues: 3
License: None
Language: R
Size: 2.11 MB
Dependencies parsed at:
19
Created at: about 6 years ago
Updated at: 3 months ago
Pushed at: over 4 years ago
Last synced at: 22 days ago
Topics: gene-expression-omnibus, pipeline, rna-seq, rna-seq-pipeline, sra, sratoolkit
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Dependencies
DESCRIPTION
cran
- R >= 3.4.0 depends
- AnnotationDbi * imports
- Biobase * imports
- EnsDb.Hsapiens.v86 * imports
- EnsDb.Mmusculus.v79 * imports
- EnsDb.Rnorvegicus.v79 * imports
- GEOquery * imports
- GenomicFeatures * imports
- RCurl * imports
- XML * imports
- org.Hs.eg.db * imports
- org.Mm.eg.db * imports
- org.Rn.eg.db * imports
- parallel * imports
- rentrez * imports
- tximport * imports
- utils * imports
- knitr * suggests
- rmarkdown * suggests