Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: phylogenetic-tree
Changwanseo/FunVIP
Fungal Identification Pipeline
Language: Python - Size: 117 MB - Last synced: about 23 hours ago - Pushed: 1 day ago - Stars: 5 - Forks: 0
sophiagosselin/tANI_tool
Script for creating a tANI distance matrix for use in phylogenetic reconstruction.
Language: Perl - Size: 142 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1 - Forks: 2
YuLab-SMU/tidytree
:shower:A Tidy Tool for Phylogenetic Tree Data Manipulation
Language: R - Size: 269 KB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 47 - Forks: 15
dfornika/tree-with-metadata
Draw a phylogenetic tree, along with a table of metadata
Language: Python - Size: 29.3 KB - Last synced: 28 days ago - Pushed: over 2 years ago - Stars: 3 - Forks: 1
bioinfweb/TreeGraph2
A feature rich and easy to use phylogenetic tree editor
Language: Java - Size: 23.8 MB - Last synced: 7 months ago - Pushed: about 3 years ago - Stars: 7 - Forks: 1
BenbowLab/Benin-NGS
Example files for Benin NGS capacity building project
Language: HTML - Size: 1.36 MB - Last synced: 7 months ago - Pushed: over 6 years ago - Stars: 0 - Forks: 0
laelbarlow/sort_seqs_by_clade
Script for sorting FASTA sequences by clade in a given tree topology.
Language: Python - Size: 3.91 KB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0
Niloth-p/Phylogenetic-Tree-construction-using-Agglomerative-and-Divisive-Hierarchical-clustering
The prog is written to construct the phylogenetic tree (dendrogram) based on DNA/Protein sequences of species given in a dataset using Agglomerative and Divisive Hierarchical Clustering and to compare Agglomerative and Divisive methods
Language: Python - Size: 124 KB - Last synced: 8 months ago - Pushed: almost 4 years ago - Stars: 2 - Forks: 1
charlesrocabert/puutools
Easy-to-use C++ library for the live tracking of lineage and coalescence trees in individual-based forward-in-time simulations.
Language: C++ - Size: 7.85 MB - Last synced: 28 days ago - Pushed: 28 days ago - Stars: 0 - Forks: 0
anicksaha/neighbor_joining
Nei-Saitou neighbor-joining algorithm for phylogeny construction/inference. Neighbor joining is a bottom-up (agglomerative) clustering method for the creation of phylogenetic/evolutionary trees.
Language: Python - Size: 1.2 MB - Last synced: about 1 year ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0
pebgroup/Global-plant-diversity
Code and data description to reproduce Tietje et al. (2022) Global variation in diversification rate and species richness are unlinked in plants (https://doi.org/10.1073/pnas.2120662119)
Language: R - Size: 185 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0
fethalen/orthoquoll
A stand-alone tool for evaluating simple statistics of orthologs
Language: Python - Size: 340 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
zengxiaofei/busco-tree
A pipeline to construct phylogenetic tree using BUSCOs
Language: Python - Size: 17.6 KB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 2 - Forks: 2
kmampent/CacheTD
Implementation of the tree triplet distance algorithms from our paper "Cache oblivious algorithms for computing the triplet distance between trees", published in ESA 2017
Language: Objective-C - Size: 16.6 KB - Last synced: 11 months ago - Pushed: almost 7 years ago - Stars: 1 - Forks: 1
tomekkorbak/computational-genomics-experiments
A couple of assignments I did for a course in computational (molecular) biology @ University of Warsaw
Language: Jupyter Notebook - Size: 1.16 MB - Last synced: about 1 year ago - Pushed: over 5 years ago - Stars: 0 - Forks: 1
