PlanktoScope/PlanktoScope

Open and Affordable Quantitative Imaging Platform

Language: Python - Size: 1.13 GB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 69 - Forks: 25

ices-tools-dev/echoSMs

Making acoustic scattering models available to fisheries and plankton scientists via the world wide web

Language: Python - Size: 5.55 MB - Last synced at: 4 days ago - Pushed at: 10 days ago - Stars: 12 - Forks: 4

EuropeanIFCBGroup/iRfcb

I 'R' FlowCytobot (iRfcb): Tools for Analyzing and Processing Data from the IFCB

Language: R - Size: 11.5 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 1 - Forks: 0

NERC-CEH/plankton_ml

A project for image processing and analysis pipelines for plankton sampling

Language: Python - Size: 32.3 MB - Last synced at: 19 days ago - Pushed at: 19 days ago - Stars: 0 - Forks: 1

mbari-org/sdcat

Sliced Detection and Clustering Analysis Toolkit

Language: Python - Size: 30.4 MB - Last synced at: 8 days ago - Pushed at: about 1 month ago - Stars: 5 - Forks: 0

SciViews/zooimage

Plankton images analysis system

Language: R - Size: 70.8 MB - Last synced at: about 1 month ago - Pushed at: about 2 years ago - Stars: 3 - Forks: 0

IrisRizos/Unassigned_Protists_SSN

Language: Python - Size: 440 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 1

garayot/Plank-AI

Plankton Detection and Counting System for cell density calculation

Language: Python - Size: 47.3 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0

cee8/planktos

Planktos is an image recognition model tailored for classifying various species of phytoplankton. Built using cutting-edge machine learning algorithms, this tool enables researchers and environmentalists to automate and accelerate the identification process, enhancing studies in marine biology and ecology.

Language: Python - Size: 484 KB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 2 - Forks: 0

ruiying-ocean/lgm_foram_census

Global compilation of existing foraminifera census data in the Last Glacial Maximum (18-21 ka)

Language: Jupyter Notebook - Size: 40.3 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

ruiying-ocean/quanternary_foram_niche

Data renalysis of Antell et al. (2021)

Language: R - Size: 9.08 MB - Last synced at: 5 months ago - Pushed at: 5 months ago - Stars: 0 - Forks: 0

Liquid-ai/Plankton

Open source simulator for maritime robotics researchers

Language: Python - Size: 76 MB - Last synced at: 5 months ago - Pushed at: over 1 year ago - Stars: 131 - Forks: 43

benpollarduk/BP.Plankton

A C# program targeting .NET 4.6.1 that simulates plankton in a pond, with the emphasis put on fun over realism.

Language: C# - Size: 356 KB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

SciViews/zooimageui

User interface for ZooImage using Shiny

Language: R - Size: 1.92 MB - Last synced at: about 1 month ago - Pushed at: almost 3 years ago - Stars: 3 - Forks: 0

raeslab/Tara-Oceans-Plankton-Interactome

Supplemental data and website for Lima-Mendez, G., et al. (2015). Determinants of community structure in the global plankton interactome Science, 348(6237).

Size: 186 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

raeslab/Tara-Oceans-Plankton-Networks

Supplemental data and website for Guidi, L., et al. (2016). Plankton networks driving carbon export in the oligotrophic ocean, Nature.

Size: 18.1 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

CasvHees/plankton Fork of 3MT120/plankton

By simulating the interactions between phytoplankton motility and turbulent flow dynamics, we seek to explain the processes contributing to observed patchiness.

Language: Python - Size: 11.1 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

Debbcwing/Sizeb_NPZD

Size-based NPZD model for understanding phytoplankton community size structure

Language: Python - Size: 9.26 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0

new-atlantis-labs/Metagenomics

🐋 The Living Oceans Metagenome Taxanomic Profiling tool (beta) is a metagenomic pipeine built to work on your local ocean

Language: Jupyter Notebook - Size: 47.1 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 7 - Forks: 2

andreasnovotny/shaRk

Discover SHARKdata: A database for Swedish national marine monitoring

Language: HTML - Size: 24.6 MB - Last synced at: almost 2 years ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

maxlever/electric-barnacle

Biomimetic art installation (see wiki)

Size: 8.79 KB - Last synced at: 6 months ago - Pushed at: almost 7 years ago - Stars: 2 - Forks: 1

Gregwar/Plankton

Plankton is a PHP pico framework

Language: PHP - Size: 629 KB - Last synced at: 2 months ago - Pushed at: over 10 years ago - Stars: 58 - Forks: 8

vanmooylipidomics/LOBSTAHS

Git repository for the R package "LOBSTAHS" (Lipid and Oxylipin Biomarker Screening Through Adduct Hierarchy Sequences)

Language: R - Size: 32.4 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 12

AntoineSalaun/PlanktonTaxaClassifier

Testing new technics to improve Plankton taxonomic classification such as ResNets and Discriminative filters DFL-VGG16.

Language: Python - Size: 7.81 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

tpollina/PlanktoScope Fork of PlanktoScope/PlanktoScope

Low-cost fluidic microscope for citizen science

Language: HTML - Size: 413 MB - Last synced at: 9 months ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 0

MoMagDii/VAUV-simulator Fork of VorteX-co/VAUV-simulator

This simulator is based on hte Plankton and used to test Vortex Robotics' AUV

Language: Python - Size: 63.2 MB - Last synced at: about 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

duncanobrien/plankton-FD

Data, code and results from O'Brien D.A., Gal G., Thackeray S.J., Matsuzaki S.S & Clements C.F. 2022. Planktonic functional diversity changes in synchrony with lake ecosystem state.

Language: R - Size: 1010 MB - Last synced at: 5 months ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

jeremyfix/planktonChallenge

The code and report of the 3MD4040 2022 challenge

Language: HTML - Size: 4.98 MB - Last synced at: 15 days ago - Pushed at: over 2 years ago - Stars: 0 - Forks: 0

PStegmann/Westberry_08_model

An implementation of the depth-resolved phytoplankton primary production model by Westberry et al. 2008.

Language: Fortran - Size: 65.4 KB - Last synced at: about 1 year ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 2

GabrieleLabanca/Competition_for_light_in_a_phytoplankton_population

Final project for my Master's Degree in Theoretical Physics

Language: TeX - Size: 47.8 MB - Last synced at: about 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0

leebardon/stats-biogeo-2021

Extracting and processing data from MIT's Darwin model, and applying statistical learning methods. In support of submitted manuscript.

Language: Python - Size: 908 KB - Last synced at: 8 days ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

mcf1110/planktool

Automatic plankton image classification software

Language: Python - Size: 4.76 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

ricknussell31/AutochemotaxisFiles

This repository will have all the code for figures and videos constructed for the paper "Analysis and Simulation of a Novel Run-and-Tumble Model with Autochemotaxis", which will appear in the Journal of Mathematical Biology.

Language: Python - Size: 9.4 MB - Last synced at: 6 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

ricknussell31/Dissertation_Code

Code from my dissertation at the University of Delaware titled "Microscopic Interactions Lead to Macroscopic Dynamics: An Analysis of Various Flocking Mechanisms."

Language: Python - Size: 913 KB - Last synced at: 6 months ago - Pushed at: almost 4 years ago - Stars: 0 - Forks: 0

krisjuune/microplate-data

A MATLAB toolbox for culture experiments to monitor cells & obtain/plot growth rate data

Language: MATLAB - Size: 133 KB - Last synced at: about 2 years ago - Pushed at: about 4 years ago - Stars: 0 - Forks: 0

SciViews/zooimagej

Image analysis part of ZooImage, with interface to ImageJ through RImageJ

Size: 13.7 KB - Last synced at: about 1 month ago - Pushed at: about 5 years ago - Stars: 0 - Forks: 0