Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: metaphlan
jrotzetter/metaphlanToPhyloseq
A simple R package to convert MetaPhlAn 4 output profiles to a phyloseq object.
Language: R - Size: 2.88 MB - Last synced: 29 days ago - Pushed: 29 days ago - Stars: 0 - Forks: 0
roseedwin/Benchmarking-taxonomic-classifiers-for-soil-shotgun-data
Benchmarking various taxonomic classifiers for profiling soil metagenomic data, with scripts and tools tailored for fungal, bacterial, and archaeal genome identification.
Language: R - Size: 510 KB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 0
pjtorres/metagenomics_tutorial
Analyzing shotgun data
Language: HTML - Size: 34.4 MB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 3 - Forks: 2
zjyoung9490/Metagenomics---Analysis-of-Colorectal-Cancer-Patients
An analysis of the metagenomic profiles of various colorectal cancer patients and healthy controls to try and identify distinct signatures between various stages of the disease.
Language: Jupyter Notebook - Size: 1.2 MB - Last synced: 8 months ago - Pushed: almost 3 years ago - Stars: 0 - Forks: 0
julianneyang/metagenomicsonhoffman
Jacobs Lab UCLA : Preprocess shotgun metagenomics data on the UCLA supercomputer
Language: Shell - Size: 158 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 1
uhkniazi/HPRU_Metagenomics
Import and process results from a metagenomics output e.g. metaphlan2
Language: R - Size: 147 KB - Last synced: 7 months ago - Pushed: almost 8 years ago - Stars: 6 - Forks: 7
AroArz/singularity_playground
This repo maintains the definition files used for building singularity images remotely. Each branch maintains a different environment.
Size: 25.4 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 1
