GitHub topics: virome
shandley/awesome-virome
A listing of software, tools and databases useful for virome analysis
Language: HTML - Size: 50.5 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 36 - Forks: 7
shandley/hecatomb
hecatomb is a virome analysis pipeline for analysis of Illumina sequence data
Language: Python - Size: 138 MB - Last synced at: 5 days ago - Pushed at: 2 months ago - Stars: 58 - Forks: 12
ohmeta/MAGIC
The Metagenome-Assembled Genome Inventory for Children (MAGIC)
Size: 49.8 KB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 3 - Forks: 0
SegataLab/viromeqc
ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichment score for each virome. The score is calculated with respect to the expected prokaryotic markers abundances in reference metagenomes
Language: Python - Size: 677 KB - Last synced at: 2 months ago - Pushed at: over 2 years ago - Stars: 19 - Forks: 1
shenwei356/kmcp
Accurate metagenomic profiling && Fast large-scale sequence/genome searching
Language: Go - Size: 82.1 MB - Last synced at: 3 months ago - Pushed at: almost 2 years ago - Stars: 187 - Forks: 13
shandley/decatomb 📦
Viral contig analysis (hecatomb-lite)
Language: Python - Size: 91.8 MB - Last synced at: 4 months ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
mtisza1/Cenote-Taker2
Cenote-Taker2: Discover and Annotate Divergent Viral Contigs (Please use Cenote-Taker 3 instead)
Language: Shell - Size: 62.3 MB - Last synced at: 4 months ago - Pushed at: over 1 year ago - Stars: 55 - Forks: 7
poursalavati/SOVAP
The Soil Virome Analysis Pipeline (SOVAP) is designed to process, analyze, and annotate viromics and metagenomics data using cutting-edge tools, providing valuable insights into the virome and microbial communities found in complex environments, such as soil ecosystems.
Language: Python - Size: 191 KB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 1
AstraBert/VirBiCla
A novel ML-based binary classifier to tell viral and non-viral long reads apart in metagenomic samples.
Language: Python - Size: 49.1 MB - Last synced at: 7 days ago - Pushed at: over 1 year ago - Stars: 1 - Forks: 0
DMnBI/ViBE
ViBE: a hierarchical BERT model to identify viruses using metagenome sequencing data
Language: Python - Size: 24.5 MB - Last synced at: over 1 year ago - Pushed at: almost 3 years ago - Stars: 6 - Forks: 1
raw937/SharkBay_virome
microbialites stromatolites metagenomes metagenomics denovo-assembly
Language: R - Size: 85 KB - Last synced at: almost 2 years ago - Pushed at: over 6 years ago - Stars: 1 - Forks: 0
hivlab/discover-virome
discover-virome: identify and quantify viruses from metagenomic assemblies
Language: Python - Size: 13 MB - Last synced at: over 2 years ago - Pushed at: over 3 years ago - Stars: 3 - Forks: 1
hivlab/quantify-virome
quantify-virome: identify and quantify viruses from metagenomic shotgun sequences
Language: Python - Size: 9.02 MB - Last synced at: over 2 years ago - Pushed at: about 5 years ago - Stars: 3 - Forks: 1