spatial-model-editor/spatial-model-editor

Spatial bio-chemical reaction model editor and simulator

Language: C++ - Size: 27.9 MB - Last synced: about 2 hours ago - Pushed: 1 day ago - Stars: 14 - Forks: 6

copasi/COPASI

COPASI is a software application for simulation and analysis of biochemical networks and their dynamics.

Language: Component Pascal - Size: 105 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 86 - Forks: 28

copasi/basico

A simplified python interface to COPASI.

Language: Python - Size: 10.4 MB - Last synced: 24 days ago - Pushed: 24 days ago - Stars: 18 - Forks: 5

copasi/COPASI.js

Emscripten COPASI Javascript Bindings

Language: C++ - Size: 793 KB - Last synced: 5 days ago - Pushed: 6 days ago - Stars: 1 - Forks: 0

copasi/copasi-dependencies

Collection of OpenSource libraries to simplify COPASI build

Language: C++ - Size: 88.7 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 7 - Forks: 3

copasi/python-copasi-testsuite

Python COPASI testing

Language: Component Pascal - Size: 1.24 MB - Last synced: 22 days ago - Pushed: 22 days ago - Stars: 1 - Forks: 0

fbergmann/pyodide-copasi

Vue3 Project using Pyodide / basico and python-copasi emscripten

Language: CSS - Size: 3.41 MB - Last synced: 28 days ago - Pushed: 29 days ago - Stars: 0 - Forks: 0

copasi/copasi-api

A more general, higher level, C++ API which can also be leveraged by other programming languages.

Language: C++ - Size: 554 KB - Last synced: about 2 months ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 1

MolecularBioinformatics/thermophilesNAD

Contains NAD biosynthesis model and python scripts to simulate the steady-state calculations.

Language: Jupyter Notebook - Size: 9.09 MB - Last synced: 2 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

charlesrocabert/MetEvolSim

MetEvolSim (Metabolome Evolution Simulator). A Python package to simulate the long-term evolution of metabolic levels.

Language: Python - Size: 43 MB - Last synced: 14 days ago - Pushed: about 2 months ago - Stars: 4 - Forks: 0

surajsept/pycoexp

A python package to integrate expression data into copasi models. It uses functionalities of python-copasi.

Language: Python - Size: 69.3 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

LedaKatopodi/compartmental-models

COPASI Implementation of a 6-compartment SEIARD model for the simulation of the COVID-19 pandemic.

Language: Component Pascal - Size: 783 KB - Last synced: 6 months ago - Pushed: almost 3 years ago - Stars: 1 - Forks: 0

jpahle/CoRC

The Copasi R connector, a high-level R API for Copasi

Language: R - Size: 26.6 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 6 - Forks: 2

Sheeran-X/Tonic_activity_in_C.elegans_O2-sensing_neurons

A quantitative model based on biochemical kinetics, repesenting the tonic Calcium activity and Calcium signalling in C. elegans Oxygen-sensing neurons, encoded in COPASI..

Language: Component Pascal - Size: 5.96 MB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 0 - Forks: 0

CiaranWelsh/pycotools3

A Python toolbox for COPASI

Language: Python - Size: 768 MB - Last synced: 2 months ago - Pushed: over 1 year ago - Stars: 13 - Forks: 2

CiaranWelsh/pycotools

A Python Toolbox for COPASI

Language: Jupyter Notebook - Size: 691 MB - Last synced: 1 day ago - Pushed: almost 5 years ago - Stars: 7 - Forks: 4

MetaSys-LISBP/glucose_acetate_interplay Fork of pierremillard/glucose_acetate_interplay

Supplementary information of Millard et al. 2023

Language: HTML - Size: 6.4 MB - Last synced: 29 days ago - Pushed: 11 months ago - Stars: 0 - Forks: 0

biosimulators/Biosimulators_COPASI

COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container

Language: Python - Size: 8.23 MB - Last synced: about 15 hours ago - Pushed: 2 months ago - Stars: 2 - Forks: 3

MetaSys-LISBP/acetate_regulation

Kinetic modeling of glucose and acetate metabolisms in E. coli

Language: Component Pascal - Size: 21.6 MB - Last synced: 29 days ago - Pushed: about 3 years ago - Stars: 5 - Forks: 2

copasi/python-petab-importer

PEtab --> COPASI importer

Language: Python - Size: 4.32 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 3 - Forks: 0

jpahle/DynamiCoRC

Dynamic Publication Media with the COPASI R Connector (CoRC)

Language: Jupyter Notebook - Size: 15.4 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 0 - Forks: 0

GeoRouv/covid19-model

📈 Examination of the impact of COVID-19 spread by using a custom epidemiological model.

Language: Component Pascal - Size: 1.01 MB - Last synced: 12 months ago - Pushed: over 2 years ago - Stars: 3 - Forks: 0

amandachen1024/Glycolysis-Model

Language: Component Pascal - Size: 37.1 KB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 0 - Forks: 0

atiselsts/spacescanner

SpaceScanner: biological model optimization space scanner

Language: Component Pascal - Size: 94.9 MB - Last synced: 4 months ago - Pushed: over 2 years ago - Stars: 2 - Forks: 0

pmendes/COVID19

code and models to analyze COVID-19 data for Connecticut and other states

Language: Component Pascal - Size: 1.1 MB - Last synced: about 1 year ago - Pushed: almost 4 years ago - Stars: 6 - Forks: 0

fbergmann/harmony_scripts

Utility scripts written during HARMONY 2021

Language: Python - Size: 80.1 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

fbergmann/pyabc-copasi

Example Scripts for using COPASI simulations in pyABC

Language: Python - Size: 151 KB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0

widdowquinn/SI_Pritchard_Birch_2014

Supplementary information/data for Pritchard & Birch (2014) doi:10.1111/mpp.12210

Language: Component Pascal - Size: 1020 KB - Last synced: about 1 month ago - Pushed: over 9 years ago - Stars: 0 - Forks: 0