GitHub topics: petab
ICB-DCM/parPE
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
Language: C++ - Size: 56.5 MB - Last synced at: 3 days ago - Pushed at: 7 months ago - Stars: 23 - Forks: 4
Benchmarking-Initiative/Benchmark-Models-PEtab
A collection of mathematical models with experimental data in the PEtab format as benchmark problems in order to evaluate new and existing methodologies for data-based modelling
Language: Python - Size: 3.53 MB - Last synced at: 9 days ago - Pushed at: 9 days ago - Stars: 29 - Forks: 18
AMICI-dev/AMICI
High-performance sensitivity analysis for large ordinary differential equation models
Language: C++ - Size: 211 MB - Last synced at: 3 days ago - Pushed at: 5 days ago - Stars: 125 - Forks: 31
PEtab-dev/libpetab-python
Python package for working with PEtab files
Language: Python - Size: 11.1 MB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 14 - Forks: 7
PEtab-dev/petab_test_suite
PEtab test suite
Language: Python - Size: 214 KB - Last synced at: 13 days ago - Pushed at: 13 days ago - Stars: 6 - Forks: 3
copasi/python-petab-importer
PEtab --> COPASI importer
Language: Python - Size: 4.33 MB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 3 - Forks: 1
PEtab-dev/petab_select
Model selection for PEtab
Language: Python - Size: 623 KB - Last synced at: 25 days ago - Pushed at: 25 days ago - Stars: 12 - Forks: 1
kmaeda16/RCGAToolbox
RCGAToolbox is a MATLAB toolbox for parameter estimation of kinetic models.
Language: MATLAB - Size: 57.1 MB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 3 - Forks: 1
yaml2sbml-dev/yaml2sbml
Tool to convert an ODE model specified in the YAML format to SBML.
Language: Python - Size: 1.4 MB - Last synced at: 3 days ago - Pushed at: about 2 years ago - Stars: 12 - Forks: 7
PEtab-dev/petabvis
PEtab visualization tool
Language: Python - Size: 184 KB - Last synced at: 3 days ago - Pushed at: almost 4 years ago - Stars: 7 - Forks: 0
fbergmann/pyabc-copasi
Example Scripts for using COPASI simulations in pyABC
Language: Python - Size: 151 KB - Last synced at: over 2 years ago - Pushed at: over 4 years ago - Stars: 0 - Forks: 0
