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GitHub / ICB-DCM / parPE
Parameter estimation for dynamical models using high-performance computing, batch and mini-batch optimizers, and dynamic load balancing.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/ICB-DCM%2FparPE
Stars: 19
Forks: 4
Open Issues: 61
License: mit
Language: C++
Repo Size: 55.9 MB
Dependencies:
51
Created: about 7 years ago
Updated: 6 months ago
Last pushed: 6 months ago
Last synced: 6 months ago
Topics: amici, dynamical-modeling, hacktoberfest, high-performance-computing, ode, optimization, parameter-estimation, petab, sbml, systems-biology
Files
Dependencies
- breathe ==4.31.0
- exhale ea77a313777c1382a7830ce9ee6c405ce47f5f3b
- ipython >=7.28.0
- matplotlib >=3.4.3
- mock >=4.0.1
- nbsphinx >=0.8.7
- petab >=0.1.20
- pkgconfig >=1.5.5
- pygments ==2.10.0
- pysb >=1.11.0
- recommonmark >=0.6.0
- setuptools >=45.2.0
- sphinx ==4.2.0
- sphinx-autodoc-typehints ==1.13.0
- sphinx_rtd_theme >=1.0.0
- sphinxcontrib-matlabdomain >=0.12.0
- sphinxcontrib-napoleon *
- IPython >=7.19.0
- Sphinx ==4.0.3
- breathe >=4.26.1
- colorama *
- coloredlogs *
- exhale >=0.2.3
- h5py *
- m2r2 >=0.2.7
- matplotlib *
- nbsphinx >=0.8.1
- numpy *
- pandas *
- petab *
- sphinx-autodoc-typehints >=1.10.3
- sphinx_rtd_theme >=0.5.1
- sympy *
- amici >=0.11.15
- colorama >=0.4.3
- coloredlogs >=15.0
- h5py >=3.0.0
- numpy >=1.18.1
- petab >=0.1.18
- python-libsbml >=5.17.0
- snakemake >=5.10.0
- termcolor >=1.1.0
- actions/checkout master composite
- actions/checkout master composite
- elgohr/Publish-Docker-Github-Action 2.8 composite
- actions/cache v1 composite
- actions/checkout master composite
- actions/checkout master composite
- ubuntu 20.04 build
- ubuntu 20.04 build