GitHub topics: sed-ml
biosimulations/biosimulations
A platform for sharing and reusing biomodeling studies including models, simulations, and visualizations of their results
Language: TypeScript - Size: 198 MB - Last synced at: 3 days ago - Pushed at: 3 days ago - Stars: 41 - Forks: 14
SED-ML/sed-ml.github.io
SED-ML website
Language: HTML - Size: 52.6 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 0 - Forks: 2
biosimulators/Biosimulators_pyNeuroML
pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.38 MB - Last synced at: about 1 month ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0
biosimulators/Biosimulators_OpenCOR
OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 1.76 MB - Last synced at: 28 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1
SED-ML/KiSAO
Ontology of algorithms for analyzing biological models, their parameters, and their outputs
Language: HTML - Size: 6.05 MB - Last synced at: 6 days ago - Pushed at: 5 months ago - Stars: 10 - Forks: 0
biosimulators/Biosimulators_COPASI
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 10.6 MB - Last synced at: 2 months ago - Pushed at: 4 months ago - Stars: 2 - Forks: 3
biosimulators/Biosimulators_test_suite
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
Language: Python - Size: 56 MB - Last synced at: about 1 month ago - Pushed at: 5 months ago - Stars: 7 - Forks: 2
biosimulators/Biosimulators_MASSpy
MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 3.64 MB - Last synced at: about 17 hours ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0
biosimulators/Biosimulators_tellurium
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 4.4 MB - Last synced at: 3 days ago - Pushed at: 3 months ago - Stars: 2 - Forks: 2
biosimulators/Biosimulators_PySCeS
PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 3.29 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0
biosimulators/Biosimulators_utils
Utilities for building standardized command-line interfaces for biosimulation software packages
Language: Python - Size: 14.1 MB - Last synced at: about 1 month ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 6
biosimulators/Biosimulators
Registry of containerized biosimulation tools that support a standard command-line interface
Language: Python - Size: 696 KB - Last synced at: 14 days ago - Pushed at: 15 days ago - Stars: 13 - Forks: 0
biosimulators/Biosimulators_AMICI
AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.5 MB - Last synced at: 4 days ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 1
maurosilber/biomodels
Python library to download and cache models from BioModels
Language: Python - Size: 30.3 KB - Last synced at: 17 days ago - Pushed at: about 1 year ago - Stars: 2 - Forks: 0
biosimulations/biosimulations-bigg
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
Language: Python - Size: 259 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 1 - Forks: 0
modaresimr/SED-MME-eval
Multimodal Evaluation for Sound Event Detection (SED)
Language: Jupyter Notebook - Size: 2.15 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
biosimulations/biosimulations-physiome
Command-line application for publishing the Physiome model repository of physiological models to the BioSimulations repository for simulation projects
Language: JavaScript - Size: 1.12 GB - Last synced at: about 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
biosimulators/Biosimulators_tutorials
Tutorials for BioSimulators
Language: Jupyter Notebook - Size: 1.71 MB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0
draeger-lab/SBMLsimulator
An efficient Java™ solver implementation for SBML
Language: Java - Size: 318 MB - Last synced at: about 1 year ago - Pushed at: almost 5 years ago - Stars: 3 - Forks: 1
biosimulators/Biosimulators_COBRApy
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.26 MB - Last synced at: 1 day ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0
biosimulations/biosimulations-modeldb
Command-line program and scheduled GitHub action for publishing the ModelDB model repository to BioSimulations
Language: MATLAB - Size: 489 MB - Last synced at: 1 day ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0
biosimulations/biosimulations-rulehub Fork of RuleWorld/RuleHub
Repository of rule-based models implemented with the BioNetGen model language (BNGL) and command-line program for publishing RuleHub to BioSimulations
Language: Python - Size: 23.5 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 0
biosimulators/Biosimulators_GillesPy2
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.4 MB - Last synced at: 5 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1
biosimulators/Biosimulators_BoolNet
BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.06 MB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
biosimulators/Biosimulators_XPP
XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 1.82 MB - Last synced at: 3 days ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1
biosimulators/Biosimulators_RBApy
RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.18 MB - Last synced at: 4 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
biosimulators/Biosimulators_LibSBMLSim Fork of libsbmlsim/libsbmlsim
LibSBMLSim mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Language: C - Size: 33.7 MB - Last synced at: about 1 hour ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
biosimulators/Biosimulators_GINsim
GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 1.76 MB - Last synced at: 13 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
biosimulators/Biosimulators_CBMPy
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.08 MB - Last synced at: 3 days ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
biosimulators/Biosimulators_iBioSim Fork of MyersResearchGroup/Biosimulators_iBioSim
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 49.1 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
biosimulators/Biosimulators_BioNetGen Fork of ASinanSaglam/BNG_BioSimDocker
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.21 MB - Last synced at: 3 days ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 2
biosimulators/Biosimulators_simulator_template
Template for a repository for building a BioSimulators-compliant command-line interface and Dockerfile for a biosimulation program
Language: Python - Size: 348 KB - Last synced at: 10 days ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 3
biosimulators/biosimulators.github.io
Summary of the technical documentation for BioSimulators
Language: Python - Size: 1.92 MB - Last synced at: about 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0