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GitHub / biosimulators / Biosimulators
Registry of containerized biosimulation tools that support a standard command-line interface
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/biosimulators%2FBiosimulators
Stars: 13
Forks: 0
Open Issues: 43
License: mit
Language: Python
Repo Size: 666 KB
Dependencies:
263
Created: over 3 years ago
Updated: about 1 month ago
Last pushed: about 20 hours ago
Last synced: about 19 hours ago
Topics: combine, computational-biology, docker, kinetic-model, kisao, mathematical-model, omex, reproducibility, reuse, sbml, sbo, sed-ml, simulation, systems-biology
Files
Dependencies
- parameterized * develop
- pytest * develop
- pytest-forked * develop
- pytest-timeout * develop
- pyyaml * develop
- requests * develop
- amici <=0.11.21
- biosimulators-amici >=0.1.22
- biosimulators-bionetgen >=0.1.20
- biosimulators-boolnet >=0.1.18
- biosimulators-cbmpy >=0.1.14
- biosimulators-cobrapy >=0.1.23
- biosimulators-copasi >=0.1.34
- biosimulators-gillespy2 >=0.1.37
- biosimulators-ginsim >=0.0.9
- biosimulators-libsbmlsim >=0.0.6
- biosimulators-masspy >=0.0.9
- biosimulators-pyneuroml >=0.0.16
- biosimulators-pysces >=0.1.25
- biosimulators-rbapy >=0.0.4
- biosimulators-tellurium >=0.1.25
- biosimulators-utils >=0.1.166
- biosimulators-xpp >=0.0.12
- cython <3
- ipython *
- libroadrunner <2.2.0
- numpy <1.22.0
- rbapy >=1.0.2
- smoldyn >=2.67
- sympy !=1.8,!=1.9
- actions/cache v2 composite
- actions/checkout v3 composite
- actions/create-release v1 composite
- docker/build-push-action v2 composite
- docker/login-action v1 composite
- docker/setup-buildx-action v1 composite
- GabrielBB/xvfb-action v1 composite
- actions/cache v2 composite
- actions/checkout v3 composite
- actions/setup-go v3 composite
- actions/setup-java v3 composite
- actions/setup-python v3 composite
- actions/upload-artifact v2 composite
- mxschmitt/action-tmate v3 composite
- ghcr.io/biosimulators/biosimulators-base latest build