GitHub topics: biosimulators
biosimulators/Biosimulators_pyNeuroML
pyNeuroML simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.38 MB - Last synced at: 10 days ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 0
biosimulators/Biosimulators_OpenCOR
OpenCOR simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 1.76 MB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 1
biosimulators/Biosimulators_COPASI
COPASI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 10.6 MB - Last synced at: 9 days ago - Pushed at: about 2 months ago - Stars: 2 - Forks: 3
biosimulators/Biosimulators_test_suite
Tool for validating that biosimulation software tools implement the BioSimulators standards for simulators
Language: Python - Size: 56 MB - Last synced at: 9 days ago - Pushed at: 5 months ago - Stars: 7 - Forks: 2
biosimulators/Biosimulators_MASSpy
MASSpy mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 3.64 MB - Last synced at: 11 days ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0
biosimulators/Biosimulators_tellurium
tellurium biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 4.4 MB - Last synced at: 13 days ago - Pushed at: 4 months ago - Stars: 2 - Forks: 2
biosimulators/Biosimulators_PySCeS
PySCeS biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 3.29 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0
biosimulators/Biosimulators_utils
Utilities for building standardized command-line interfaces for biosimulation software packages
Language: Python - Size: 14.1 MB - Last synced at: 7 days ago - Pushed at: about 2 months ago - Stars: 4 - Forks: 6
biosimulators/Biosimulators_AMICI
AMICI biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.5 MB - Last synced at: 14 days ago - Pushed at: about 1 year ago - Stars: 3 - Forks: 1
EBI-BioModels/SBO
The Systems Biology Ontology (SBO) is a set of controlled, relational vocabularies of terms commonly used in Systems Biology, and in particular in computational modeling.
Size: 705 KB - Last synced at: about 2 months ago - Pushed at: almost 2 years ago - Stars: 9 - Forks: 3
biosimulations/biosimulations-bigg
Command-line program and scheduled GitHub action for publishing the BiGG model repository to BioSimulations
Language: Python - Size: 259 MB - Last synced at: 9 days ago - Pushed at: about 2 months ago - Stars: 1 - Forks: 0
biosimulators/Biosimulators_tutorials
Tutorials for BioSimulators
Language: Jupyter Notebook - Size: 1.71 MB - Last synced at: about 2 years ago - Pushed at: about 2 years ago - Stars: 1 - Forks: 0
biosimulators/Biosimulators_COBRApy
COBRApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.26 MB - Last synced at: 12 days ago - Pushed at: about 3 years ago - Stars: 2 - Forks: 0
biosimulators/Biosimulators_GillesPy2
GillesPy2 biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.4 MB - Last synced at: 6 months ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 1
biosimulators/Biosimulators_BoolNet
BoolNet biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.06 MB - Last synced at: 6 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
biosimulators/Biosimulators_XPP
XPP mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 1.82 MB - Last synced at: 13 days ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 1
biosimulators/Biosimulators_RBApy
RBApy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.18 MB - Last synced at: 15 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
biosimulators/Biosimulators_LibSBMLSim Fork of libsbmlsim/libsbmlsim
LibSBMLSim mathematical simulation program via BioSimulators-compliant command-line interface and Docker container
Language: C - Size: 33.7 MB - Last synced at: 10 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
biosimulators/Biosimulators_GINsim
GINsim biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 1.76 MB - Last synced at: 23 days ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
biosimulators/Biosimulators_CBMPy
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.08 MB - Last synced at: 13 days ago - Pushed at: about 3 years ago - Stars: 0 - Forks: 0
biosimulators/Biosimulators_iBioSim Fork of MyersResearchGroup/Biosimulators_iBioSim
CBMPy biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 49.1 MB - Last synced at: about 2 years ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0
biosimulators/Biosimulators_BioNetGen Fork of ASinanSaglam/BNG_BioSimDocker
BioNetGen biochemical network simulation program via BioSimulators-compliant command-line interface and Docker container
Language: Python - Size: 2.21 MB - Last synced at: 13 days ago - Pushed at: about 3 years ago - Stars: 1 - Forks: 2
biosimulators/Biosimulators_simulator_template
Template for a repository for building a BioSimulators-compliant command-line interface and Dockerfile for a biosimulation program
Language: Python - Size: 348 KB - Last synced at: 20 days ago - Pushed at: over 3 years ago - Stars: 4 - Forks: 3
biosimulators/biosimulators.github.io
Summary of the technical documentation for BioSimulators
Language: Python - Size: 1.92 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0