Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: stoichiometric-reactions
SysBioChalmers/Yarrowia_lipolytica_W29-GEM
Genome-scale model of Yarrowia lipolytica.
Language: MATLAB - Size: 3.61 MB - Last synced: 7 months ago - Pushed: almost 3 years ago - Stars: 7 - Forks: 7
gibbslab/g2f
An R package to find the gaps in metabolic networks, and fill it from the stoichiometric reactions of a reference metabolic reconstruction using a weighting function. Also include the option to download all the set of gene-associated stoichiometric reactions for a specific organism from the KEGG database.
Language: R - Size: 566 KB - Last synced: 7 months ago - Pushed: over 3 years ago - Stars: 5 - Forks: 3
gibbslab/minval
An R package to identify orphan metabolites and evaluate the mass and charge balance of stoichiometric reactions. The package also includes functions to characterize and write models in TSV and SBML formats, extract all reactants, products, metabolite names and compartments from a metabolic reconstruction.
Language: R - Size: 7.1 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 2 - Forks: 1
djinnome/rxneqn
This is code to support the computation of stoichiometric equations for the Thermodynamic Electon Equivalents Model (TEEM) developed by Rittman and McCarty.
Language: Python - Size: 32.2 KB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 1 - Forks: 0
