GitHub topics: multi-omic-integration
aapupu/MIST
An interpretable and flexible deep learning framework for single-T cell transcriptome and receptor analysis
Language: Jupyter Notebook - Size: 44 MB - Last synced at: 22 days ago - Pushed at: 22 days ago - Stars: 8 - Forks: 0
welch-lab/pyliger
Python package for integrating and analyzing multiple single-cell datasets (A Python version of LIGER)
Language: Jupyter Notebook - Size: 104 MB - Last synced at: 26 days ago - Pushed at: about 2 months ago - Stars: 30 - Forks: 6
TT2DR-StenoDiabetesCenterCopenhagen/COFstudy_AdiposeSerum_Multi-Omics-
Detrimental effects of carbohydrate overfeeding of non-obese early middle-aged low birthweight men with and without non-alcoholic fatty liver disease (NAFLD) based on fasting serum samples and adipose tissue biopsies.
Size: 132 KB - Last synced at: about 2 months ago - Pushed at: about 2 months ago - Stars: 0 - Forks: 0
ScottCampit/emt-cobra Fork of sriram-lab/emt-cobra
Modeling the metabolic changes during the epithelial-to-mesenchymal transition.
Language: HTML - Size: 15.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
kris96tian/MOFAX_Online
MOFA+ (Multi-Omics Factor Analysis) online tool
Language: Python - Size: 17.8 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0
xinglab-ai/genomap
Cartography of Genomic Interactions Enables Deep Analysis of Single-Cell Expression Data (Nature Communications, 2023)
Language: Python - Size: 43.7 MB - Last synced at: about 2 months ago - Pushed at: 11 months ago - Stars: 15 - Forks: 3
agugonrey/MOSS
MOSS: Multi-Omic integration via Sparse Singular Decomposition
Language: R - Size: 10.3 MB - Last synced at: 6 months ago - Pushed at: about 1 year ago - Stars: 7 - Forks: 3
saifeldeen-bio/MultiOmics
MOFA (Multi-Omics Factor Analysis) is a computational framework and statistical method designed for the integration and analysis of multi-omics data.
Language: R - Size: 4.88 KB - Last synced at: about 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0
Shamir-Lab/INTEND
INTEND (IntegratioN of Transcriptomic and EpigeNomic Data), a novel algorithm for integrating gene expression and DNA methylation datasets covering disjoint sets of samples
Language: R - Size: 97.7 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 4 - Forks: 0
bhi-kimlab/neticspy
Python implementation of NetICS (Network-based Integration of Multi-omics data).
Language: Python - Size: 137 KB - Last synced at: about 1 month ago - Pushed at: over 3 years ago - Stars: 1 - Forks: 1
Cancer-Research-Project/NBS-KIRP-CNV
Codebase and Data for the work on Network diffusion-based approach for survival prediction and identification of biomarkers using multi-omics data of Papillary Renal Cell Carcinoma
Language: Jupyter Notebook - Size: 124 MB - Last synced at: almost 2 years ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
llrs/thesis
PhD thesis on data integration on inflammatory bowel disease
Language: TeX - Size: 220 MB - Last synced at: 18 days ago - Pushed at: almost 3 years ago - Stars: 0 - Forks: 0
