Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: immunogenomics
snaketron/IgGeneUsage
Comparison of gene usage in immune repertoires under different biological conditions
Language: R - Size: 281 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 6 - Forks: 2
TRON-Bioinformatics/neofox
Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
Language: Python - Size: 88.6 MB - Last synced: 17 days ago - Pushed: 6 months ago - Stars: 25 - Forks: 5
aislyn/TCR_circos
R function to generate a circos-style ggplot from single-cell TCR data.
Language: R - Size: 218 KB - Last synced: 9 months ago - Pushed: over 2 years ago - Stars: 4 - Forks: 0
immunogenomics/amp_phase1_ra
:ear_of_rice: Zhang, et al, Nature Immunology, 2019. Use single-cell transcriptomics and proteomics to study autoimmune diseases.
Language: Jupyter Notebook - Size: 18 MB - Last synced: about 1 year ago - Pushed: over 3 years ago - Stars: 17 - Forks: 12
fanzhanglab/amp_phase1_ra
Code for Zhang, Wei, Slowikowski, Fonseka, Rao, et al, Nature Immunology, 2019. Single-cell transcriptomics and proteomics data analysis and integration for rheumatoid arthritis synovial tissue. These integrative strategies can be generalized to any other diseases.
Language: Jupyter Notebook - Size: 2.94 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0
rbowenj/disTIL
The disTIL immunoprofiling toolkit
Language: Common Workflow Language - Size: 3.02 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 1
fanzhanglab/TteK
Code for Jonsson*, Zhang*, et al, TteK (Granzyme K+ CD8 T cells), Science Translational Medicine, 2022: the core population of inflamed human tissue-associated CD8 T cells.
Language: Jupyter Notebook - Size: 9.49 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0