Ecosyste.ms: Repos
An open API service providing repository metadata for many open source software ecosystems.
GitHub topics: immune-repertoire
immunomind/immunarch
🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires
Language: R - Size: 425 MB - Last synced: 16 days ago - Pushed: about 2 months ago - Stars: 291 - Forks: 64
uio-bmi/immuneML
immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
Language: Python - Size: 189 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 56 - Forks: 28
Qile0317/APackOfTheClones
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representing expanded clones as differently sized circles.
Language: R - Size: 168 MB - Last synced: 1 day ago - Pushed: about 1 month ago - Stars: 13 - Forks: 1
snaketron/IgGeneUsage
Comparison of gene usage in immune repertoires under different biological conditions
Language: R - Size: 281 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 6 - Forks: 2
uio-bmi/compairr
Comparison of Adaptive Immune Receptor Repertoires
Language: C++ - Size: 296 KB - Last synced: 7 months ago - Pushed: 12 months ago - Stars: 20 - Forks: 4
akds/BASIC
BASIC: BCR and TCR assembly from single cell RNA-seq
Language: Python - Size: 43.6 MB - Last synced: 8 months ago - Pushed: almost 5 years ago - Stars: 7 - Forks: 2
vadimnazarov/shade-repertoire
Limitations of machine learning models for specificity prediction of T-cell receptor sequences
Language: Jupyter Notebook - Size: 130 MB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
vadimnazarov/immunometric
Siamese network-based metric learning for dimensionality reduction and visualization
Language: Jupyter Notebook - Size: 339 MB - Last synced: 10 months ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
snaketron/IgStats
Suit of statistical procedures for robust quantification of various BCR and TCR repertoire properties
Language: R - Size: 6.65 MB - Last synced: 10 months ago - Pushed: over 4 years ago - Stars: 1 - Forks: 0
pughlab/immunogenomics_pedNST
Immunogenomics of pediatric nervous system tumours
Language: Jupyter Notebook - Size: 23.7 MB - Last synced: 15 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0
