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GitHub / snaketron / IgGeneUsage
Comparison of gene usage in immune repertoires under different biological conditions
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/snaketron%2FIgGeneUsage
Stars: 6
Forks: 2
Open Issues: 0
License: mit
Language: R
Repo Size: 281 MB
Dependencies:
21
Created: almost 5 years ago
Updated: about 1 month ago
Last pushed: about 2 months ago
Last synced: about 2 months ago
Commit Stats
Commits: 505
Authors: 7
Mean commits per author: 72.14
Development Distribution Score: 0.133
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/snaketron/IgGeneUsage
Topics: b-cell-receptor, bcr-repertoire, differential-analysis, differential-gene-expression, high-throughput-sequencing, immune-repertoire, immune-repertoire-analysis, immune-repertoires, immunogenomics, immunoglobulin, immunoinformatics, immunological-bioinformatics, immunology, tcr-repertoire, vdj-recombination
Files
Dependencies
- R >= 3.6.0 depends
- Rcpp >= 0.12.0 depends
- StanHeaders > 2.18.1 depends
- SummarizedExperiment * depends
- methods * depends
- reshape2 >= 1.4.3 imports
- rstan >= 2.19.2 imports
- BiocStyle * suggests
- ggforce * suggests
- ggplot2 * suggests
- ggrepel * suggests
- gridExtra * suggests
- knitr * suggests
- rmarkdown * suggests
- testthat >= 2.1.0 suggests
- actions/checkout v2 composite
- actions/upload-artifact main composite
- r-lib/actions/check-r-package v1 composite
- r-lib/actions/setup-pandoc v1 composite
- r-lib/actions/setup-r v1 composite
- r-lib/actions/setup-r-dependencies v1 composite