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GitHub / TRON-Bioinformatics / neofox
Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/TRON-Bioinformatics%2Fneofox
Stars: 25
Forks: 5
Open Issues: 3
License: gpl-3.0
Language: Python
Repo Size: 88.6 MB
Dependencies:
32
Created: over 3 years ago
Updated: 8 months ago
Last pushed: 6 months ago
Last synced: about 1 month ago
Commit Stats
Commits: 1310
Authors: 12
Mean commits per author: 109.17
Development Distribution Score: 0.605
More commit stats: https://commits.ecosyste.ms/hosts/GitHub/repositories/TRON-Bioinformatics/neofox
Topics: bioinformatics, cancer-immunology, immunogenicity-prediction, immunogenomics, neoantigen-annotation, neoantigens, netmhciipan, netmhcpan
Files
Dependencies
- actions/checkout v2 composite
- actions/setup-python v2 composite
- python 3.7-slim build
- Jinja2 ==3.1.2
- Sphinx ==5.3.0
- ipykernel ==6.4.1
- ipython ==7.27.0
- m2r2 ==0.3.3
- markupsafe ==2.1.1
- nbsphinx ==0.8.9
- pandoc ==2.2
- pydata-sphinx-theme ==0.11.0
- betterproto *
- biopython ==1.76
- dask >=2021.10.0
- distributed >=2021.10.0
- faker *
- logzero >=1.5.0
- mock *
- numpy >=1.21
- orjson *
- pandas >=1.1.5
- pysam *
- python-dotenv *
- python-dotenv ==0.12.0
- scikit-learn *
- scipy >=1.5.4
- xmltodict *