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GitHub / MetExplore / dexom-python
diversity-based enumeration of optimal context-specific metabolic networks using the cobrapy library
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/MetExplore%2Fdexom-python
Stars: 1
Forks: 0
Open Issues: 0
License: gpl-3.0
Language: Python
Repo Size: 1.61 MB
Dependencies:
67
Created: almost 2 years ago
Updated: 7 days ago
Last pushed: 2 months ago
Last synced: 4 days ago
Topics: cobrapy, constraint-based-modeling, metabolism, omics-data-integration, optimization, python
Files
Dependencies
- cobra ^0.25
- matplotlib ^3.5.1
- numpy 1.20
- python >=3.7,<3.10
- scikit-learn ^1.0.2
- scipy 1.7
- six ^1.16
- statsmodels ^0.13.2
- symengine ^0.9.2
- anyio 3.6.1
- appdirs 1.4.4
- certifi 2022.6.15
- cobra 0.25.0
- commonmark 0.9.1
- cycler 0.11.0
- depinfo 1.7.0
- diskcache 5.4.0
- fonttools 4.33.3
- future 0.18.2
- h11 0.12.0
- httpcore 0.15.0
- httpx 0.23.0
- idna 3.3
- importlib-metadata 4.12.0
- importlib-resources 5.8.0
- joblib 1.1.0
- kiwisolver 1.4.3
- matplotlib 3.5.2
- mpmath 1.2.1
- numpy 1.20.0
- optlang 1.5.2
- packaging 21.3
- pandas 1.1.5
- patsy 0.5.2
- pillow 9.1.1
- pydantic 1.9.1
- pygments 2.12.0
- pyparsing 3.0.9
- python-dateutil 2.8.2
- python-libsbml 5.19.5
- pytz 2022.1
- rfc3986 1.5.0
- rich 12.4.4
- ruamel.yaml 0.17.21
- ruamel.yaml.clib 0.2.6
- scikit-learn 1.0.2
- scipy 1.7.0
- setuptools-scm 7.0.3
- six 1.16.0
- sniffio 1.2.0
- statsmodels 0.13.2
- swiglpk 5.0.5
- symengine 0.9.2
- sympy 1.10.1
- threadpoolctl 3.1.0
- tomli 2.0.1
- typing-extensions 4.2.0
- zipp 3.8.0