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GitHub / OpenOmics / modr
An awesome Oxford Nanopore Pipeline for direct RNA-sequencing
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/OpenOmics%2Fmodr
Stars: 5
Forks: 1
Open Issues: 0
License: mit
Language: Python
Repo Size: 689 KB
Dependencies:
43
Created: over 1 year ago
Updated: 4 months ago
Last pushed: 4 months ago
Last synced: 4 months ago
Topics: alternative-splicing-analysis, bioinformatics, differential-expression-analysis, direct-rna-sequencing, known-transcripts, novel-transcripts, oxford-nanopore, pipeline, polya-tail-length-estimation, quality-control, rna-editing, rna-modifications, singularity, snakemake-pipeline, transcriptomics
Files
Dependencies
- actions/checkout v2 composite
- actions/setup-python v2 composite
- actions/checkout v2 composite
- docker://snakemake/snakemake v5.24.2 composite
- registry.codeocean.com/codeocean/miniconda3 4.9.2-python3.8-ubuntu20.04 build
- ubuntu 22.04 build
- ubuntu 22.04 build
- ubuntu 22.04 build
- ubuntu 22.04 build
- GitPython ==3.1.7
- Jinja2 ==2.11.3
- Markdown ==3.2.2
- MarkupSafe ==1.1.1
- PyYAML >=5.4
- babel >=2.9.1
- click ==7.1.2
- future ==0.18.2
- gitdb ==4.0.5
- htmlmin ==0.1.12
- importlib-metadata >=3.10
- joblib ==0.16.0
- jsmin ==3.0.0
- livereload ==2.6.1
- lunr ==0.5.8
- mike *
- mkdocs >=1.3.0
- mkdocs-awesome-pages-plugin ==2.2.1
- mkdocs-git-revision-date-localized-plugin ==0.7
- mkdocs-git-revision-date-plugin *
- mkdocs-material *
- mkdocs-material-extensions *
- mkdocs-minify-plugin ==0.3.0
- mkdocs-redirects ==1.0.1
- nltk >=3.6.6
- pygments >=2.12
- pymdown-extensions *
- pytz ==2020.1
- regex *
- six ==1.15.0
- smmap ==3.0.4
- tornado ==6.0.4
- tqdm ==4.48.2
- zipp ==3.1.0