Ecosyste.ms: Repos
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GitHub topics: transcriptome-annotation
gauravcodepro/sequence-annotation
A function to make the genome and the transcriptome annotations to reflect the gene regions and how they should be displayed. Provided a gff file and asked annotation and other columns it uses pygenomeviz to make all the annotation maps.
Language: Python - Size: 17.6 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0
gauravcodepro/transdecoder-visualization
a regular expression based trinity assembly transdecoder predictions encoder which will parse and will prepare the transcript annotations for visualization with any genome visualization kit such as pygenomeviz, mauve and others, it prepares the coordinates as tuples
Language: Python - Size: 18.6 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0
gauravcodepro/tair-gff-ids
A set of functions which will provide easy access and cleaned gff from tair and uses a dataframe and datascience approach to get the systematic tair ids and their coordinates from the tair 10 gff version. It can be applied to any version of the tair for getting the systematic retrival of the tair ids.
Language: Python - Size: 4.69 MB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0
gauravcodepro/trinity-blast-machine-learning
a scalable and faster implementation for the genome and the transcriptome annotations for large scale sequencing datasets.
Language: Python - Size: 48.8 KB - Last synced: 9 days ago - Pushed: 14 days ago - Stars: 0 - Forks: 0
laelbarlow/amoebae
Workflow for identifying and classifying homologous gene/protein sequences
Language: Python - Size: 7.57 MB - Last synced: 7 months ago - Pushed: 12 months ago - Stars: 16 - Forks: 2
ncbi/cloud-transcriptome-annotation
Time and cost comparison on GCP and AWS for transcriptome annotation
Language: Jupyter Notebook - Size: 1.58 GB - Last synced: 22 days ago - Pushed: over 3 years ago - Stars: 3 - Forks: 5
jungsoh/transcriptomics-course
Material used for a course on transcriptomics, covering transcriptome assembly, transcriptome functional annotation, differential expression analysis, and functional annotation data mining
Language: HTML - Size: 20.3 MB - Last synced: about 1 year ago - Pushed: over 2 years ago - Stars: 1 - Forks: 0
SotongDJ/CelebrationNight
Transcriptome analytic tools for non-model organism
Language: Python - Size: 583 KB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 1 - Forks: 0
koualab/itap
Fast and accurate venom gland transcriptome annotation.
Language: Perl - Size: 11.8 MB - Last synced: about 1 year ago - Pushed: about 3 years ago - Stars: 0 - Forks: 0
