GitHub topics: cnv-detection

Repositories

ICAGEN/muscadet

multiomics single-cell copy number alterations detection

Language: R - Size: 20.8 MB - Last synced at: 2 days ago - Pushed at: 2 days ago - Stars: 1 - Forks: 1

oicr-gsi/sequenza

Workflow for Sequenza, cellularity and ploidy

Language: R - Size: 317 KB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 18 - Forks: 2

single-cell-genetics/XClone

Detection of allele-specific subclonal copy number alterations from single-cell transcriptomic data.

Language: Python - Size: 4.41 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 36 - Forks: 5

kharchenkolab/numbat

Haplotype-aware CNV analysis from single-cell RNA-seq

Language: R - Size: 390 MB - Last synced at: about 5 hours ago - Pushed at: 11 days ago - Stars: 181 - Forks: 24

JEFworks-Lab/HoneyBADGER

HMM-integrated Bayesian approach for detecting CNV and LOH events from single-cell RNA-seq data

Language: R - Size: 52.8 MB - Last synced at: 2 months ago - Pushed at: almost 4 years ago - Stars: 96 - Forks: 31

dooguypapua/eKLIPse

a tool for predicting mitochondrial DNA deletions using soft-clipping

Language: Python - Size: 35.8 MB - Last synced at: 6 months ago - Pushed at: over 3 years ago - Stars: 21 - Forks: 11

CenterForMedicalGeneticsGhent/WisecondorX Fork of VUmcCGP/wisecondor

WisecondorX — An evolved WISECONDOR

Language: Python - Size: 35.8 MB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 94 - Forks: 41

Rongtingting/CNV_calling_Benchmark

Benchmarking records for scRNA-seq CNV detection.

Language: Python - Size: 2.03 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 1

payalgarg123/Bioinformatics

CNV-detection algorithm developed with large Dataset

Language: HTML - Size: 3.85 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 0 - Forks: 0

ARUP-NGS/cobalt

Cobalt is a tool to detect copy-number variants from next generation sequencing (NGS) data

Language: Python - Size: 30.3 MB - Last synced at: about 1 year ago - Pushed at: almost 3 years ago - Stars: 5 - Forks: 1

mccoy-lab/LD-PGTA

Linkage disequlibrium-informed PGT-A (LD-PGTA). A package for detecting genotypic signatures of aneuploidy from extremely low-coverage sequence data.

Language: Python - Size: 10.5 MB - Last synced at: over 1 year ago - Pushed at: over 2 years ago - Stars: 10 - Forks: 0

mmterpstra/CoNVaDING_reload Fork of duartemolha/CoNVaDING_reload

Fork of the CoNVaDING software - Copy Number Variation Detection In NGS Gene panels was designed for small (single-exon) copy number variation (CNV) detection in high coverage NGS data.

Language: HTML - Size: 3.22 MB - Last synced at: almost 2 years ago - Pushed at: about 6 years ago - Stars: 0 - Forks: 0

ip4-team/amplicnv

ampliCNV is a Python 3.x package for copy number (CNV) variation detection on whole exome sequencing (WES) data from amplicon-based enrichment technologies.

Language: Python - Size: 3.15 MB - Last synced at: 8 days ago - Pushed at: over 2 years ago - Stars: 8 - Forks: 0