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GitHub / mskcc / ACCESS-Pipeline
cfDNA Sequencing Pipeline with UMI
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/mskcc%2FACCESS-Pipeline
Stars: 8
Forks: 3
Open Issues: 52
License: mit
Language: Python
Repo Size: 276 MB
Dependencies:
141
Created: over 6 years ago
Updated: 9 months ago
Last pushed: over 1 year ago
Last synced: 1 day ago
Topics: cancer-genomics
Files
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Readme
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Dependencies
environment.yaml
conda
- _libgcc_mutex 0.1
- _r-mutex 1.0.0
- binutils_impl_linux-64 2.28.1.*
- binutils_linux-64 7.2.0.*
- bioconductor-dnacopy 1.58.0.*
- bwidget 1.9.11
- bzip2 1.0.8.*
- ca-certificates 2019.11.28.*
- cairo 1.14.12.*
- curl 7.67.0.*
- fontconfig 2.13.0.*
- freetype 2.9.1.*
- fribidi 1.0.5.*
- gcc_impl_linux-64 7.2.0.*
- gcc_linux-64 7.2.0.*
- gfortran_impl_linux-64 7.2.0.*
- gfortran_linux-64 7.2.0.*
- glib 2.56.2.*
- graphite2 1.3.13.*
- gsl 2.4.*
- gxx_impl_linux-64 7.2.0.*
- gxx_linux-64 7.2.0.*
- harfbuzz 1.8.8.*
- icu 58.2.*
- jpeg 9b.*
- krb5 1.16.1.*
- libcurl 7.67.0.*
- libedit 3.1.20181209.*
- libffi 3.2.1.*
- libgcc-ng 9.1.0.*
- libgfortran-ng 7.3.0.*
- libpng 1.6.37.*
- libssh2 1.8.2.*
- libstdcxx-ng 9.1.0.*
- libtiff 4.1.0.*
- libuuid 1.0.3.*
- libxcb 1.13.*
- libxml2 2.9.9.*
- make 4.2.1.*
- ncurses 6.1.*
- openssl 1.1.1d.*
- pango 1.42.4.*
- pcre 8.43.*
- pip 19.3.1
- pixman 0.38.0.*
- python 2.7.17.*
- r-ape 5.1.*
- r-argparse 1.1.1.*
- r-assertthat 0.2.0.*
- r-backports 1.1.5.*
- r-base 3.5.1.*
- r-bh 1.66.0_1.*
- r-bibtex 0.4.2.*
- r-bindr 0.1.1.*
- r-bindrcpp 0.2.2.*
- r-bitops 1.0_6.*
- r-catools 1.17.1.1.*
- r-ckmeans.1d.dp 4.3.0.*
- r-cli 1.1.0.*
- r-cluster 2.0.7_1.*
- r-colorspace 1.3_2.*
- r-crayon 1.3.4.*
- r-curl 3.2.*
- r-data.table 1.11.4.*
- r-devtools 1.13.6.*
- r-dichromat 2.0_0.*
- r-digest 0.6.15.*
- r-dplyr 0.8.3.*
- r-ellipsis 0.3.0.*
- r-fansi 0.4.0.*
- r-findpython 1.0.3.*
- r-gbrd 0.4_11.*
- r-gdata 2.18.0.*
- r-getopt 1.20.2.*
- r-ggplot2 3.0.0.*
- r-git2r 0.23.0.*
- r-glue 1.3.0.*
- r-gplots 3.0.1.*
- r-gridbase 0.4_7.*
- r-gridextra 2.3.*
- r-gridgraphics 0.4_1.*
- r-gtable 0.2.0.*
- r-gtools 3.8.1.*
- r-httr 1.3.1.*
- r-jsonlite 1.5.*
- r-kernsmooth 2.23_15.*
- r-labeling 0.3.*
- r-lattice 0.20_35.*
- r-lazyeval 0.2.1.*
- r-lifecycle 0.1.0.*
- r-magrittr 1.5.*
- r-mass 7.3_50.*
- r-matrix 1.2_14.*
- r-memoise 1.1.0.*
- r-memuse 4.0_0.*
- r-mgcv 1.8_24.*
- r-mime 0.5.*
- r-munsell 0.5.0.*
- r-nlme 3.1_137.*
- r-openssl 1.0.2.*
- r-permute 0.9_5.*
- r-pillar 1.4.2.*
- r-pinfsc50 1.1.0.*
- r-pkgconfig 2.0.3.*
- r-plogr 0.2.0.*
- r-plyr 1.8.4.*
- r-proto 1.0.0.*
- r-purrr 0.2.5.*
- r-r6 2.2.2.*
- r-rcolorbrewer 1.1_2.*
- r-rcpp 1.0.3.*
- r-rdpack 0.11_0.*
- r-reshape2 1.4.3.*
- r-rjson 0.2.20.*
- r-rlang 0.4.2.*
- r-rstudioapi 0.7.*
- r-scales 0.5.0.*
- r-stringi 1.2.4.*
- r-stringr 1.3.1.*
- r-tibble 2.1.3.*
- r-tidyr 0.8.1.*
- r-tidyselect 0.2.5.*
- r-utf8 1.1.4.*
- r-vcfr 1.8.0.*
- r-vctrs 0.2.0.*
- r-vegan 2.5_6.*
- r-viridislite 0.3.0.*
- r-wesanderson 0.3.6.*
- r-whisker 0.3_2.*
- r-withr 2.1.2.*
- r-yaml 2.2.0.*
- r-zeallot 0.1.0.*
- readline 7.0.*
- setuptools 42.0.2
- sqlite 3.30.1.*
- tk 8.6.8.*
- tktable 2.10.*
- wheel 0.33.6
- xz 5.2.4.*
- zlib 1.2.11.*
- zstd 1.3.7.*