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GitHub / iossifovlab / gpf
GPF: Genotypes and Phenotypes in Families
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/iossifovlab%2Fgpf
Stars: 1
Forks: 0
Open Issues: 61
License: mit
Language: Python
Repo Size: 75.3 MB
Dependencies:
112
Created: almost 5 years ago
Updated: 17 days ago
Last pushed: 20 days ago
Last synced: 20 days ago
Topics: genomics, variant-annotation, variants
Files
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Readme
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Dependencies
environment.yml
conda
- aiohttp 3.8.1.*
- bcftools 1.15.1.*
- cerberus 1.3.4.*
- dask 2022.1.0.*
- dask-kubernetes 2022.1.0.*
- deprecation 2.1.0.*
- django 4.0.6.*
- django-cors-headers 3.7.0.*
- djangorestframework 3.12.4.*
- fsspec 2022.5.0.*
- google-cloud-bigquery 2.34.2.*
- hadoop 3.1.2.*
- htslib 1.15.1.*
- ijson 3.1.4.*
- importlib_metadata 4.11.3.*
- impyla 0.16.3.*
- jinja2 3.0.1.*
- lark-parser 0.6.7.*
- matplotlib-base 3.5.1.*
- networkx 2.7.1.*
- numpy 1.22.3.*
- openjdk 8.0.312.*
- pandas 1.4.2.*
- pyarrow 7.0.0.*
- pyliftover 0.4.*
- pysam 0.19.0.*
- python 3.9.*
- python-box 5.3.0.*
- s3fs 2022.5.0.*
- samtools 1.15.1.*
- scikit-learn 1.0.1.*
- scipy 1.7.3.*
- setuptools 52.0.0.*
- snakemake-minimal 6.12.1.*
- snakeobjects 3.0.7.*
- sqlalchemy 1.4.27.*
- sqlite 3.36.0.*
- thrift 0.13.0.*
- thriftpy2 0.4.14.*
- toml 0.10.2.*
- tqdm 4.62.3.*
requirements.txt
pypi
- aiohttp ==3.8.1
- bandit ==1.7.4
- bcftools ==1.15.1
- bump2version ==1.0.1
- cerberus ==1.3.4
- coverage ==6.3.2
- dask ==2022.1.0
- dask-jobqueue ==0.7.3
- dask-kubernetes ==2022.1.0
- deprecation ==2.1.0
- django ==4.0.6
- django-cors-headers ==3.7.0
- django-stubs ==1.10.1
- djangorestframework ==3.12.4
- flake8 ==4.0.1
- flake8-docstrings ==1.6.0
- flake8-quotes ==3.3.1
- fsspec ==2022.5.0
- google-cloud-bigquery ==2.34.2
- hadoop ==3.1.2
- htslib ==1.15.1
- ijson ==3.1.4
- importlib_metadata ==4.11.3
- impyla ==0.16.3
- jinja2 ==3.0.1
- lark-parser ==0.6.7
- matplotlib-base ==3.5.1
- moto ==3.1.11
- mypy ==0.931
- networkx ==2.7.1
- numpy ==1.22.3
- openjdk ==8.0.312
- pandas ==1.4.2
- pandas-stubs ==1.2.0.58
- pip ==21.3.1
- pyarrow ==7.0.0
- pyliftover ==0.4
- pylint ==2.13.8
- pysam ==0.19.0
- pytest ==7.1.2
- pytest-cov ==3.0.0
- pytest-django ==4.5.2
- pytest-doctestplus ==0.12.0
- pytest-mock ==3.7.0
- python ==3.9
- python-box ==5.3.0
- rangehttpserver ===1.2.0
- s3fs ==2022.5.0
- samtools ==1.15.1
- scikit-learn ==1.0.1
- scipy ==1.7.3
- setuptools ==52.0.0
- snakemake-minimal ==6.12.1
- snakeobjects ==3.0.7
- sphinx ==4.5.0
- sphinx-autorun ===1.1.1
- sphinx-copybutton ==0.5.0
- sphinx_rtd_theme ==1.0.0
- sphinxcontrib-httpdomain ==1.8.0
- sqlalchemy ==1.4.27
- sqlalchemy-stubs ==0.4
- sqlite ==3.36.0
- thrift ==0.13.0
- thriftpy2 ==0.4.14
- toml ==0.10.2
- tqdm ==4.62.3
- types-python-dateutil ==2.8.9
- types-pyyaml ==6.0.7
- types-requests ==2.27.30
- types-setuptools ==57.4.14
- types-toml ==0.10.3