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GitHub / victor369basu / ProteinStructurePrediction
Protein structure prediction is the task of predicting the 3-dimensional structure (shape) of a protein given its amino acid sequence and any available supporting information. In this section, we will Install and inspect sidechainnet, a dataset with tools for predicting and inspecting protein structures, complete two simplified implementations of Attention based Networks for predicting protein angles from amino acid sequences, and visualize our predictions along the way.
Stars: 10
Forks: 2
Open Issues: 0
License: mit
Language: Python
Repo Size: 35 MB
Dependencies:
7
Created: almost 2 years ago
Updated: about 2 months ago
Last pushed: almost 2 years ago
Last synced: 14 days ago
Topics: 3d, ai, attention-mechanism, bioinformatics, data-science, machine-learning, medical, protein, protein-structure, python3, pytorch, transformer
Funding links: https://github.com/sponsors/victor369basu
Files
Dependencies
- einops ==0.4.1
- matplotlib ==3.2.2
- numpy ==1.21.6
- py3Dmol ==1.8.0
- sidechainnet ==v0.7.5
- torch ==1.12.0
- tqdm ==4.64.0