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Package Usage: pypi: sidechainnet
Tools and data for all-atom protein structure prediction via machine learning.
10 versions
Latest release: almost 2 years ago
305 downloads last month
View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/sidechainnet
View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/jonathanking%2Fsidechainnet
Dependent Repos 5
lucidrains/ddpm-proteins
A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms- * setup.py
Size: 94.7 KB - Last synced: 8 days ago - Pushed: about 2 years ago
hypnopump/ClynMut
To be a next-generation DL-based phenotype prediction from genome mutations.- * setup.py
Size: 95.7 KB - Last synced: about 2 months ago - Pushed: about 3 years ago
hypnopump/rgn2-replica
Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1- * setup.py
Size: 11.3 MB - Last synced: about 2 months ago - Pushed: about 2 years ago
victor369basu/ProteinStructurePrediction
Protein structure prediction is the task of predicting the 3-dimensional structure (shape) of a protein given its amino acid sequence and any available supporting information. In this section, we will Install and inspect sidechainnet, a dataset with tools for predicting and inspecting protein structures, complete two simplified implementations of Attention based Networks for predicting protein angles from amino acid sequences, and visualize our predictions along the way.- ==v0.7.5 requirements.txt
Size: 35 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago
n98848tj/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released- * setup.py
Last synced: over 1 year ago
indra-ipd/GCPNet Fork of BioinfoMachineLearning/GCPNet
A PyTorch implementation of Geometry-Complete SE(3)-Equivariant Perceptron Networks (GCPNets)- ==0.7.6 environment.yaml
Size: 299 MB - Last synced: about 2 months ago - Pushed: 11 months ago
alright-code/AlphaFold2
PyTorch Implementation of Simplified AlphaFold2- ==0.7.5 requirements.txt
Size: 18.6 KB - Last synced: 2 months ago - Pushed: almost 2 years ago
wwang2/CoarseGrainingVAE
Geometric super-resolution for molecular geometries- ==0.7.0 requirements.txt
Size: 578 KB - Last synced: 10 months ago - Pushed: almost 2 years ago
zerack5/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released- * setup.py
Size: 19.5 MB - Last synced: 11 months ago - Pushed: over 2 years ago
xxiexuezhi/helix_gan
Prepared source code for paper titled "HelixGAN a deep learning methodology for conditional de novo design of α-helix structures"- =0.7.5=pypi_0 requirement.txt
Size: 152 KB - Last synced: 11 months ago - Pushed: over 1 year ago
Xinxinatg/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released- * setup.py
Size: 19.3 MB - Last synced: 11 months ago - Pushed: about 3 years ago
Dongcf/bio-diffusion Fork of BioinfoMachineLearning/bio-diffusion
A PyTorch hub of denoising diffusion probabilistic models designed to generate novel biological data- ==0.7.6 environment.yaml
Size: 4.31 MB - Last synced: 10 months ago - Pushed: over 1 year ago
joolstorrentecalo/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released- * setup.py
Size: 19.3 MB - Last synced: 2 months ago - Pushed: over 1 year ago
ChinggyLiu/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released- * setup.py
Size: 19.5 MB - Last synced: about 2 months ago - Pushed: almost 3 years ago
biocheming/CoarseGrainingVAE Fork of wwang2/CoarseGrainingVAE
Geometric super-resolution for molecular geometries- ==0.7.0 requirements.txt
Size: 578 KB - Last synced: 10 months ago - Pushed: almost 2 years ago
lyndonlens/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released- * setup.py
Size: 19.5 MB - Last synced: 10 months ago - Pushed: over 2 years ago
APengs494/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released- * setup.py
Size: 18.8 MB - Last synced: 10 months ago - Pushed: about 3 years ago
RichMix/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released- * setup.py
Size: 19.3 MB - Last synced: 9 months ago - Pushed: over 1 year ago
chaojiangcn/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released- * setup.py
Size: 19.5 MB - Last synced: 9 months ago - Pushed: almost 3 years ago
JING-XINXING/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released- * setup.py
Size: 19.5 MB - Last synced: 9 months ago - Pushed: almost 3 years ago
icloudsong/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released- * setup.py
Size: 19.3 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago
shannjiang/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released- * setup.py
Size: 19.3 MB - Last synced: 9 months ago - Pushed: over 1 year ago
tinker710/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released- * setup.py
Size: 11.4 MB - Last synced: 9 months ago - Pushed: about 3 years ago
ofTarradiddle/alphafold2copy
- * setup.py
Size: 19.3 MB - Last synced: about 2 months ago - Pushed: over 1 year ago
learningmatter-mit/GenZProt
- ==0.7.0 environment.yml
Size: 13.9 MB - Last synced: about 2 months ago - Pushed: 3 months ago
BioinfoMachineLearning/GCPNet-EMA
Protein Structure Accuracy Estimation using Geometry-Complete Perceptron Networks (Protein Science 2024)- ==0.7.6 environment.yaml
Size: 30.5 MB - Last synced: 28 days ago - Pushed: 3 months ago
BioinfoMachineLearning/bio-diffusion
A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization- ==0.7.6 environment.yaml
Size: 48.2 MB - Last synced: 28 days ago - Pushed: about 2 months ago
mrjoness/Flow-Back
Generative backmapping of coarse-grained molecular systems using an equivariant graph neural network and flow-matching- ==1.0.1 environment.yml
Size: 37.3 MB - Last synced: about 1 month ago - Pushed: about 1 month ago
jh2ee/ProteinStructurePrediction
- ==v0.7.5 requirements.txt
Size: 35.6 MB - Last synced: 5 days ago - Pushed: 5 days ago