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Package Usage: pypi: sidechainnet

Tools and data for all-atom protein structure prediction via machine learning.
10 versions
Latest release: almost 2 years ago
305 downloads last month

View more package details: https://packages.ecosyste.ms/registries/pypi.org/packages/sidechainnet

View more repository details: https://repos.ecosyste.ms/hosts/GitHub/repositories/jonathanking%2Fsidechainnet

Dependent Repos 5

lucidrains/ddpm-proteins
A denoising diffusion probabilistic model (DDPM) tailored for conditional generation of protein distograms
  • * setup.py

Size: 94.7 KB - Last synced: 8 days ago - Pushed: about 2 years ago

hypnopump/ClynMut
To be a next-generation DL-based phenotype prediction from genome mutations.
  • * setup.py

Size: 95.7 KB - Last synced: about 2 months ago - Pushed: about 3 years ago

hypnopump/rgn2-replica
Replication attempt for the Protein Folding Model described in https://www.biorxiv.org/content/10.1101/2021.08.02.454840v1
  • * setup.py

Size: 11.3 MB - Last synced: about 2 months ago - Pushed: about 2 years ago

victor369basu/ProteinStructurePrediction
Protein structure prediction is the task of predicting the 3-dimensional structure (shape) of a protein given its amino acid sequence and any available supporting information. In this section, we will Install and inspect sidechainnet, a dataset with tools for predicting and inspecting protein structures, complete two simplified implementations of Attention based Networks for predicting protein angles from amino acid sequences, and visualize our predictions along the way.
  • ==v0.7.5 requirements.txt

Size: 35 MB - Last synced: about 1 month ago - Pushed: almost 2 years ago

n98848tj/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  • * setup.py

Last synced: over 1 year ago

indra-ipd/GCPNet Fork of BioinfoMachineLearning/GCPNet
A PyTorch implementation of Geometry-Complete SE(3)-Equivariant Perceptron Networks (GCPNets)
  • ==0.7.6 environment.yaml

Size: 299 MB - Last synced: about 2 months ago - Pushed: 11 months ago

007gzs/test
  • * requirements.txt

Size: 1.6 MB - Last synced: 5 months ago - Pushed: 5 months ago

alright-code/AlphaFold2
PyTorch Implementation of Simplified AlphaFold2
  • ==0.7.5 requirements.txt

Size: 18.6 KB - Last synced: 2 months ago - Pushed: almost 2 years ago

wwang2/CoarseGrainingVAE
Geometric super-resolution for molecular geometries
  • ==0.7.0 requirements.txt

Size: 578 KB - Last synced: 10 months ago - Pushed: almost 2 years ago

zerack5/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  • * setup.py

Size: 19.5 MB - Last synced: 11 months ago - Pushed: over 2 years ago

xxiexuezhi/helix_gan
Prepared source code for paper titled "HelixGAN a deep learning methodology for conditional de novo design of α-helix structures"
  • =0.7.5=pypi_0 requirement.txt

Size: 152 KB - Last synced: 11 months ago - Pushed: over 1 year ago

Xinxinatg/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  • * setup.py

Size: 19.3 MB - Last synced: 11 months ago - Pushed: about 3 years ago

Dongcf/bio-diffusion Fork of BioinfoMachineLearning/bio-diffusion
A PyTorch hub of denoising diffusion probabilistic models designed to generate novel biological data
  • ==0.7.6 environment.yaml

Size: 4.31 MB - Last synced: 10 months ago - Pushed: over 1 year ago

joolstorrentecalo/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  • * setup.py

Size: 19.3 MB - Last synced: 2 months ago - Pushed: over 1 year ago

ChinggyLiu/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  • * setup.py

Size: 19.5 MB - Last synced: about 2 months ago - Pushed: almost 3 years ago

biocheming/CoarseGrainingVAE Fork of wwang2/CoarseGrainingVAE
Geometric super-resolution for molecular geometries
  • ==0.7.0 requirements.txt

Size: 578 KB - Last synced: 10 months ago - Pushed: almost 2 years ago

lyndonlens/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  • * setup.py

Size: 19.5 MB - Last synced: 10 months ago - Pushed: over 2 years ago

APengs494/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  • * setup.py

Size: 18.8 MB - Last synced: 10 months ago - Pushed: about 3 years ago

RichMix/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  • * setup.py

Size: 19.3 MB - Last synced: 9 months ago - Pushed: over 1 year ago

chaojiangcn/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  • * setup.py

Size: 19.5 MB - Last synced: 9 months ago - Pushed: almost 3 years ago

JING-XINXING/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  • * setup.py

Size: 19.5 MB - Last synced: 9 months ago - Pushed: almost 3 years ago

icloudsong/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  • * setup.py

Size: 19.3 MB - Last synced: about 2 months ago - Pushed: almost 2 years ago

shannjiang/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  • * setup.py

Size: 19.3 MB - Last synced: 9 months ago - Pushed: over 1 year ago

tinker710/alphafold2 Fork of lucidrains/alphafold2
To eventually become an unofficial Pytorch implementation / replication of Alphafold2, as details of the architecture get released
  • * setup.py

Size: 11.4 MB - Last synced: 9 months ago - Pushed: about 3 years ago

ofTarradiddle/alphafold2copy
  • * setup.py

Size: 19.3 MB - Last synced: about 2 months ago - Pushed: over 1 year ago

learningmatter-mit/GenZProt
  • ==0.7.0 environment.yml

Size: 13.9 MB - Last synced: about 2 months ago - Pushed: 3 months ago

BioinfoMachineLearning/GCPNet-EMA
Protein Structure Accuracy Estimation using Geometry-Complete Perceptron Networks (Protein Science 2024)
  • ==0.7.6 environment.yaml

Size: 30.5 MB - Last synced: 28 days ago - Pushed: 3 months ago

BioinfoMachineLearning/bio-diffusion
A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization
  • ==0.7.6 environment.yaml

Size: 48.2 MB - Last synced: 28 days ago - Pushed: about 2 months ago

mrjoness/Flow-Back
Generative backmapping of coarse-grained molecular systems using an equivariant graph neural network and flow-matching
  • ==1.0.1 environment.yml

Size: 37.3 MB - Last synced: about 1 month ago - Pushed: about 1 month ago

jh2ee/ProteinStructurePrediction
  • ==v0.7.5 requirements.txt

Size: 35.6 MB - Last synced: 5 days ago - Pushed: 5 days ago