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GitHub / SBRG / ssbio
A Python framework for structural systems biology
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/SBRG%2Fssbio
Stars: 101
Forks: 28
Open Issues: 28
License: mit
Language: Python
Repo Size: 38.2 MB
Dependencies:
37
Created: over 8 years ago
Updated: about 1 month ago
Last pushed: over 3 years ago
Last synced: 26 days ago
Topics: cobrapy, constraint-based-modeling, protein-structure, structural-biology, structural-systems-biology, systems-biology
Files
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Readme
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Dependencies
- ipywidgets ==7.0.0
- jupyter_contrib_nbextensions *
- nglview ==1.0
- requests *
- requests_cache ==0.4.13
- ssbio *
- ipykernel *
- nbsphinx *
- sphinx >=1.4
- sphinx_rtd_theme *
requirements.txt
pypi
- awesome-slugify *
- bcbio-gff *
- beautifulsoup4 ==4.5.3
- biopandas *
- biopython >=1.69
- bioservices *
- cobra >=0.6.1
- deprecation *
- ipywidgets ==7.0.0
- joblib *
- json-tricks >3.0
- lxml *
- matplotlib *
- mmtf-python *
- more_itertools *
- msgpack-python *
- nbsphinx *
- networkx *
- numpy *
- pandas *
- pytest *
- requests >=2.13.0
- scipy *
- seaborn *
- six *
- tqdm *
- xmltodict *