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GitHub / aqlaboratory / openfold
Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/aqlaboratory%2Fopenfold
Stars: 2,420
Forks: 442
Open Issues: 157
License: apache-2.0
Language: Python
Repo Size: 15.3 MB
Dependencies:
23
Created: over 2 years ago
Updated: 3 days ago
Last pushed: 4 days ago
Last synced: 3 days ago
Topics: alphafold2, protein-structure, pytorch
Files
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Readme
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Dependencies
- actions/checkout v2 composite
- actions/checkout v2 composite
- actions/setup-python v2 composite
Dockerfile
docker
- nvidia/cuda 11.3.1-cudnn8-runtime-ubuntu18.04 build
environment.yml
pypi
- PyYAML ==5.4.1
- biopython ==1.79
- deepspeed ==0.5.10
- dm-tree ==0.1.6
- ml-collections ==0.1.0
- modelcif ==0.7
- numpy ==1.21.2
- pytorch_lightning ==1.5.10
- requests ==2.26.0
- scipy ==1.7.1
- tqdm ==4.62.2
- typing-extensions ==3.10.0.2
- wandb ==0.12.21
- PyYAML ==5.4.1
- biopython ==1.79
- dm-tree ==0.1.6
- ml-collections ==0.1.0
- requests ==2.26.0
- typing-extensions ==3.10.0.2
setup.py
pypi