Ecosyste.ms: Repos

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GitHub topics: pymol-plugin

Repositories

pymodproject/pymod

PyMod 3 - sequence similarity searches, multiple sequence/structure alignments, and homology modeling within PyMOL.

Language: Python - Size: 1.69 MB - Last synced: 3 days ago - Pushed: 3 days ago - Stars: 69 - Forks: 19

The repository pymolschortucts contains the a collection of shortcuts that are loaded on startup of PyMOL. These shortcuts enable websearches from within PyMOL as well as many other convienent functions that make work in PyMOL more productive..

Language: Python - Size: 29.1 MB - Last synced: 9 days ago - Pushed: 9 days ago - Stars: 62 - Forks: 17

abdullateefv/PyMolCopilot

An AI Assistant for the PyMOL molecular visualization software

Language: Python - Size: 3.34 MB - Last synced: 23 days ago - Pushed: 23 days ago - Stars: 0 - Forks: 0

rasbt/BondPack

A collection of PyMOL plugins to visualize atomic bonds.

Language: Python - Size: 8.93 MB - Last synced: 3 days ago - Pushed: over 3 years ago - Stars: 21 - Forks: 11

paiardin/DockingPie

A Consensus Docking Plugin for PyMOL

Language: Python - Size: 212 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 58 - Forks: 11

xing1wan/list_unaligned_resi

A PyMOL script to calculate alpha carbon distances between two aligned protein structures

Language: Python - Size: 8.79 KB - Last synced: 2 months ago - Pushed: 2 months ago - Stars: 0 - Forks: 0

smutao/PyVibMS

A PyMOL plugin for visualizing vibrations in molecules and solids

Language: Python - Size: 2.88 MB - Last synced: 2 months ago - Pushed: over 2 years ago - Stars: 35 - Forks: 8

LBC-LNBio/parKVFinder

parKVFinder: thread-level parallel KVFinder

Language: Python - Size: 21.9 MB - Last synced: 7 months ago - Pushed: about 1 year ago - Stars: 10 - Forks: 7

unizar-flav/PyViewDock

Docking viewer plug-in for PyMOL

Language: Python - Size: 1.39 MB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 3 - Forks: 0

JMB-Scripts/dssp-to-pymol

Assess the secondary structure in Pymol

Language: Python - Size: 8.79 KB - Last synced: 7 months ago - Pushed: 7 months ago - Stars: 0 - Forks: 0

MengwuXiao/GetBox-PyMOL-Plugin

A PyMOL Plugin for calculating docking box for LeDock, AutoDock and AutoDock Vina.

Language: Python - Size: 2.73 MB - Last synced: 7 months ago - Pushed: almost 5 years ago - Stars: 57 - Forks: 14

ArturKlauser/pymol-pdb-plugin

PDB plugin for PyMOL

Language: Python - Size: 5.45 MB - Last synced: 3 months ago - Pushed: over 4 years ago - Stars: 3 - Forks: 0

bobbypaton/wSterimol

Generate Boltzmann-weighted Sterimol Steric Parameters for Conformationally-Flexible Substituents

Language: Python - Size: 989 KB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 24 - Forks: 10

RUBi-ZA/pyMODE-TASK

MODE-TASK plugin for PyMOL

Language: C++ - Size: 9.18 MB - Last synced: 4 months ago - Pushed: about 1 year ago - Stars: 3 - Forks: 1

HNUBioinformatics/InPrNa

A tool for insight into protein-nucleic acids interaction information

Language: Python - Size: 515 MB - Last synced: 9 months ago - Pushed: over 4 years ago - Stars: 2 - Forks: 2

scatter3d/noodle-strut

noodle-strut is an interactive 3D printing structural support module for PyMOL

Language: Python - Size: 3.73 MB - Last synced: 6 months ago - Pushed: about 2 years ago - Stars: 1 - Forks: 1

miroslavkurka/wkplugin

A PyMol plugin for calculating Wu-Kabat Variability and displaying it on the pdb model

Language: Python - Size: 17.6 KB - Last synced: 6 months ago - Pushed: 6 months ago - Stars: 1 - Forks: 0

NRGlab/NRGsuite Fork of lmorency/NRGsuite

NRGsuite is a PyMOL plugin (GUI) for FlexAID

Language: Python - Size: 12.2 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 3 - Forks: 3

HaolingZHANG/pymolBE

Customized batch exhibition of three-dimensional molecules based on pymol framework

Language: Python - Size: 32.1 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 4 - Forks: 0

zmactep/pymol-designer

Protein design tools as PyMOL plugin

Language: Python - Size: 7.81 KB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

SerenaRosi/PyMOL-toolbox

Language: Python - Size: 36.1 KB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 1 - Forks: 0

LBC-LNBio/parKVFinder-win

parKVFinder-win: thread-level parallel KVFinder for Windows

Language: C - Size: 1.85 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 7 - Forks: 4

LBC-LNBio/PyMOL-KVFinder-web-Tools

PyMOL KVFinder-web Tools: a PyMOL v2 plugin for interacting with KVFinder-web service

Language: Python - Size: 1.83 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 1 - Forks: 0

cbalbin-bio/pymol-color-alphafold

PyMOL extension to color AlphaFold structures by confidence (pLDDT).

Language: Python - Size: 1.88 MB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 33 - Forks: 13

rinikerlab/restraintmaker

Restraintmaker is a tool intended to build Position or Distance restraints for Molecular Dynamics simulations (or any other simulation technique with coordinate-based particles). It can be used on a script layer or as an interactive plugin for PyMol. Features are different selection modes and Optimizers to distribute restraints.

Language: Python - Size: 34 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 8 - Forks: 3