GitHub / RicoLeiser / Genome2Tree
This repository provides an easy-to-use Python-based pipeline for reconstructing phylogenetic trees from whole bacterial genomes. It automates the process of identifying orthologous single-copy genes, aligning sequences, trimming alignments, and generating a concatenated supermatrix ready for phylogenetic analysis. The pipeline requires only .fasta
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PURL: pkg:github/RicoLeiser/Genome2Tree
Stars: 0
Forks: 0
Open issues: 0
License: apache-2.0
Language: Python
Size: 6.89 MB
Dependencies parsed at: Pending
Created at: 4 months ago
Updated at: 4 months ago
Pushed at: 4 months ago
Last synced at: 4 months ago
Topics: bacterial-genomics, bioinformatics, comparative-genomics, comparative-genomics-studies, concatination, evolutionary-biology, phylogenetics, phylogeny, supermatrix, whole-genome, whole-genome-sequencing