biocorecrg/MOP2

Master of Pores 2

Language: Nextflow - Size: 209 MB - Last synced: 2 days ago - Pushed: 6 months ago - Stars: 22 - Forks: 7

nanoporetech/pychopper 📦

A tool to identify, orient, trim and rescue full length cDNA reads

Language: Python - Size: 52 MB - Last synced: 7 days ago - Pushed: almost 2 years ago - Stars: 78 - Forks: 22

adnaniazi/tailfindr

An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.

Language: R - Size: 18.6 MB - Last synced: 2 days ago - Pushed: about 1 month ago - Stars: 49 - Forks: 15

nanoporetech/pipeline-transcriptome-de 📦

Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads

Language: Python - Size: 124 KB - Last synced: 7 days ago - Pushed: over 1 year ago - Stars: 105 - Forks: 25

nanoporetech/isONclust2

A tool for de novo clustering of long transcriptomic reads

Language: C++ - Size: 643 KB - Last synced: 7 days ago - Pushed: over 1 year ago - Stars: 13 - Forks: 3

nanoporetech/pipeline-pinfish-analysis 📦

Pipeline for annotating genomes using long read transcriptomics data with pinfish

Language: Python - Size: 137 KB - Last synced: 7 days ago - Pushed: over 3 years ago - Stars: 27 - Forks: 5

nanoporetech/pinfish 📦

Tools to annotate genomes using long read transcriptomics data

Language: Go - Size: 120 MB - Last synced: 7 days ago - Pushed: over 3 years ago - Stars: 43 - Forks: 13

nanoporetech/pipeline-nanopore-denovo-isoforms 📦

Pipeline for de novo clustering of long transcriptomic reads

Language: Python - Size: 27.2 MB - Last synced: 7 days ago - Pushed: over 2 years ago - Stars: 26 - Forks: 6

nanoporetech/pipeline-pychopper 📦

Utility pipeline for running pychopper, a tool to identify full length cDNA reads

Language: Python - Size: 70.3 KB - Last synced: 7 days ago - Pushed: over 3 years ago - Stars: 2 - Forks: 0

nanoporetech/hammerpede

A package for training strand-specific profile HMMs for primer sets from real Nanopore data

Language: Python - Size: 946 KB - Last synced: 7 days ago - Pushed: over 3 years ago - Stars: 5 - Forks: 2

BADDxmu/IncDNA

Size: 128 MB - Last synced: 12 months ago - Pushed: almost 4 years ago - Stars: 0 - Forks: 1