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GitHub / adnaniazi / tailfindr
An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
JSON API: https://repos.ecosyste.ms/api/v1/hosts/GitHub/repositories/adnaniazi%2Ftailfindr
Stars: 48
Forks: 15
Open Issues: 15
License: gpl-3.0
Language: R
Repo Size: 18.6 MB
Dependencies:
24
Created: almost 6 years ago
Updated: 15 days ago
Last pushed: 2 days ago
Last synced: 1 day ago
Topics: bioinformatics, cdna, nanopore, r, rna
Files
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Readme
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Dependencies
DESCRIPTION
cran
- R >= 3.5.0 depends
- Biostrings >= 2.48.0 imports
- Rsamtools >= 2.0.1 imports
- cli >= 1.0.1 imports
- crayon >= 1.3.4 imports
- data.table >= 1.11.4 imports
- doParallel >= 1.0.11 imports
- doSNOW >= 1.0.16 imports
- dplyr >= 0.7.6 imports
- foreach >= 1.4.4 imports
- ggplot2 >= 3.0.0 imports
- hdf5r >= 1.0.0 imports
- magrittr >= 1.5 imports
- parallel >= 3.5.0 imports
- psych >= 1.8.12 imports
- purrr >= 0.2.5 imports
- rbokeh >= 0.4.2 imports
- stats >= 3.0.0 imports
- tibble >= 1.4.2 imports
- tidyr >= 0.8.3 imports
- knitr * suggests
- rmarkdown * suggests
- testthat * suggests
Dockerfile
docker
- rocker/verse 4.2.3 build