GitHub topics: life-sciences

Repositories

deeporiginbio/deeporigin-client

Deep Origin CLI and Python client

Language: Python - Size: 9.56 MB - Last synced at: 4 days ago - Pushed at: 4 days ago - Stars: 10 - Forks: 0

Constellab/gws_omix

Constellab brick for omics data analysis

Language: Python - Size: 10.9 MB - Last synced at: 5 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 0

Data Manager App is a Flutter-based project that demonstrates efficient local data management with a clean and modern UI. It features CRUD operations powered by SQLite, making it an excellent tool for learning or showcasing app development skills in Flutter.

Size: 1000 Bytes - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 2 - Forks: 0

TGAC/COPO-production

COPO is a Django-based platform that serves as a metadata broker to describe research data per FAIR principles. It supports community-recognised metadata standards, ensuring data is discoverable, interoperable, and accessible. Submitted data is accessible via public repositories, promoting long-term preservation and reuse across systems.

Language: JavaScript - Size: 139 MB - Last synced at: 9 days ago - Pushed at: 10 days ago - Stars: 1 - Forks: 2

DatViseR/Vivid-Volcano

A shiny app for custom analyzes of preprocessed omics data

Language: HTML - Size: 27.1 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 1 - Forks: 0

open-life-science/open-life-science.github.io

OLS website: web presence and knowledge management for we-are-ols.org

Language: HTML - Size: 129 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 68 - Forks: 92

hyperspy/hyperspy

Multidimensional data analysis

Language: Python - Size: 301 MB - Last synced at: 10 days ago - Pushed at: 13 days ago - Stars: 539 - Forks: 213

STRIDES/NIHCloudLabGCP

Documentation and tutorials on using GCP for biomedical research

Language: Jupyter Notebook - Size: 92.5 MB - Last synced at: 5 days ago - Pushed at: 5 days ago - Stars: 29 - Forks: 20

IFB-ElixirFr/biosphere

IFB Clouds Federation for Life Science

Size: 4.05 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 1 - Forks: 2

carpentries-incubator/bioc-intro

Bioconductor data science introduction

Language: R - Size: 738 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 27 - Forks: 31

NIGMS/NIGMS-Sandbox

Collection of cloud-based biomedical data science learning modules funded by the National Institute of General Medical Sciences at the NIH

Language: Shell - Size: 19.8 MB - Last synced at: 18 days ago - Pushed at: 18 days ago - Stars: 69 - Forks: 17

OBOFoundry/OBOFoundry.github.io

Metadata and website for the Open Bio Ontologies Foundry Ontology Registry

Language: Python - Size: 50 MB - Last synced at: 11 days ago - Pushed at: 11 days ago - Stars: 175 - Forks: 208

leriomaggio/deep-learning-health-life-sciences

Workshop on Deep Learning for Health and Life Sciences

Language: Jupyter Notebook - Size: 28.7 MB - Last synced at: 15 days ago - Pushed at: almost 2 years ago - Stars: 15 - Forks: 4

carpentries-incubator/bioc-project

Introduction to the Bioconductor project

Language: R - Size: 16.7 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 18 - Forks: 15

servierhub/top-life-sciences

Top Life Sciences open-source software

Language: Makefile - Size: 1.72 MB - Last synced at: 9 days ago - Pushed at: 11 months ago - Stars: 10 - Forks: 2

qbicsoftware/data-manager-app

A web-based life science omics and imaging data management solution

Language: Java - Size: 77.1 MB - Last synced at: 8 days ago - Pushed at: 10 days ago - Stars: 10 - Forks: 1

chupvl/awesome-ls-ventures

Awesome list of the data and AI/ML related projects with direct Life Science Companies participation

Size: 40 KB - Last synced at: 6 days ago - Pushed at: 7 months ago - Stars: 34 - Forks: 4

servierhub/top-pharma50

Top open source software from the top 50 pharmaceutical companies

Language: Makefile - Size: 540 KB - Last synced at: 7 days ago - Pushed at: 11 months ago - Stars: 59 - Forks: 3

STRIDES/NIHCloudLabAWS

Documentation and tutorials on using AWS for biomedical research

Language: Jupyter Notebook - Size: 76.5 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 16 - Forks: 14

uh-joan/mcp-cortellis

An MCP server enabling AI assistants to search and analyze pharmaceutical data through Cortellis. Features comprehensive drug search, ontology exploration, and real-time clinical trial data access.

Language: Python - Size: 0 Bytes - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 0 - Forks: 0

ELIXIR-Norway-Training/DMP-writing-workshop

Teaching material for DMP writing course

Size: 490 MB - Last synced at: about 1 month ago - Pushed at: about 1 month ago - Stars: 4 - Forks: 7

hyperspy/hyperspyUI

A user interface for the hyperspy package. https://hyperspy.org/hyperspyUI

Language: Python - Size: 14.6 MB - Last synced at: 12 days ago - Pushed at: 13 days ago - Stars: 27 - Forks: 15

carpentries-lab/metagenomics-analysis

Data Processing and Visualization for Metagenomics

Language: Python - Size: 28.4 MB - Last synced at: about 1 month ago - Pushed at: 6 months ago - Stars: 13 - Forks: 33

UK-Space-LABS/ukspacelabs-website

Repository for the UK Space LABS Association's website

Size: 1.33 MB - Last synced at: 10 days ago - Pushed at: 10 days ago - Stars: 0 - Forks: 0

wlandau/rpharma2023

R/Pharma 2023 workshop: leveraging {targets} and {crew} to simulate clinical trials

Language: HTML - Size: 15.9 MB - Last synced at: 12 days ago - Pushed at: about 1 year ago - Stars: 7 - Forks: 1

carpentries-incubator/bioc-rnaseq

Analysis and Interpretation of Bulk RNA-Seq Data using Bioconductor

Language: R - Size: 53.1 MB - Last synced at: 18 days ago - Pushed at: 3 months ago - Stars: 22 - Forks: 36

VincentAlcazer/StatAid

StatAid is a Shiny app built in an R package to guide researchers and clinicians through data analysis

Language: R - Size: 37.8 MB - Last synced at: 6 days ago - Pushed at: 8 months ago - Stars: 7 - Forks: 3

AstraBert/hophop-science Fork of aweekj/kiko-now

My blog

Language: SCSS - Size: 14 MB - Last synced at: 8 days ago - Pushed at: 3 months ago - Stars: 1 - Forks: 0

TACC/ctls2017 Fork of jamescarson3/ctls2017

Part of the TACC Institute Series, Immersive Training in Advanced Computation

Language: HTML - Size: 18.4 MB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 2 - Forks: 2

jwdietrich21/quantum-salis

Collection of algorithms for computational statistics in life sciences

Language: Pascal - Size: 165 KB - Last synced at: 3 months ago - Pushed at: 3 months ago - Stars: 0 - Forks: 0

ebiwd/EBI-Icon-fonts

A collection of functional and scientific icons for EMBL-EBI sites.

Language: JavaScript - Size: 3.94 MB - Last synced at: 7 days ago - Pushed at: about 5 years ago - Stars: 17 - Forks: 4

servierhub/top-pharma-fr

Top open source software from French pharmaceutical companies

Language: Makefile - Size: 110 KB - Last synced at: 7 days ago - Pushed at: 11 months ago - Stars: 2 - Forks: 0

openpharma/brms.mmrm

R package to run Bayesian MMRMs using {brms}

Language: R - Size: 15 MB - Last synced at: 1 day ago - Pushed at: 7 months ago - Stars: 21 - Forks: 2

sundeeep/drugboard.ai Fork of drugboard/drugboard.ai

LinkedIn like platform for the Life Sciences People to Collaborate and Connect Scientifically leveraging AI.

Language: JavaScript - Size: 19.7 MB - Last synced at: 4 months ago - Pushed at: 4 months ago - Stars: 1 - Forks: 0

bridgedb/BridgeDbR Fork of egonw/BridgeDbR

Bioconductor R package for BridgeDb

Language: R - Size: 8.46 MB - Last synced at: 23 days ago - Pushed at: 6 months ago - Stars: 4 - Forks: 3

BiGCAT-UM/PRA3006-SPARQL

This ebook has information about life science databases, their SPARQL endpoints, what information they hold, what data models they use, and how to query those.

Language: Groovy - Size: 1.95 MB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 1 - Forks: 0

Kendiukhov/biodl

Deep learning for biology and bioinformatics with the emphasis on systems biology.

Language: Python - Size: 17.6 KB - Last synced at: 6 months ago - Pushed at: 6 months ago - Stars: 0 - Forks: 0

hyperspy/exspy-demos

eXSpy Jupyter Notebook demos

Language: Jupyter Notebook - Size: 60.6 MB - Last synced at: 19 days ago - Pushed at: 7 months ago - Stars: 2 - Forks: 5

fusion-jena/semantic-search-usability-analysis

Supplementary material for a usability evaluation of a semantic search for biological datasets

Language: Jupyter Notebook - Size: 21.3 MB - Last synced at: 7 months ago - Pushed at: 7 months ago - Stars: 1 - Forks: 0

awslabs/guidance-for-multi-omics-and-multi-modal-data-integration-and-analysis-on-aws

This guidance creates a scalable environment in AWS to prepare genomic, clinical, mutation, expression and imaging data for large-scale analysis and perform interactive queries against a data lake. The solution also demonstrates the use of Amazon Omics for multi-modal analysis.

Language: Jupyter Notebook - Size: 179 KB - Last synced at: 1 day ago - Pushed at: about 1 year ago - Stars: 24 - Forks: 8

bridgedb/datasources

Repository with the BridgeDb data source.

Language: Python - Size: 130 KB - Last synced at: 7 months ago - Pushed at: 9 months ago - Stars: 4 - Forks: 8

msuzen/scientificMemo

Codes from the blog Scientific Memo

Language: Jupyter Notebook - Size: 251 KB - Last synced at: 9 months ago - Pushed at: 9 months ago - Stars: 2 - Forks: 0

rorevello/EBOS

EBOS is an advanced software tool designed to assist researchers in identifying and utilizing relevant ontologies in their fields of study

Language: Python - Size: 783 KB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 1 - Forks: 0

wlandau/rmedicine2020

Slides and source code for a talk about drake at R/Medicine 2020.

Language: HTML - Size: 2.59 MB - Last synced at: 12 days ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

ereynrs/ereynrs.github.io

At the Confluence

Language: SCSS - Size: 2.58 MB - Last synced at: 10 months ago - Pushed at: 10 months ago - Stars: 0 - Forks: 0

wlandau/rpharma2023-pipeline

R/Pharma 2023 workshop example code: leveraging {targets} and {crew} to simulate clinical trials

Language: R - Size: 4.88 KB - Last synced at: 18 days ago - Pushed at: over 1 year ago - Stars: 10 - Forks: 3

lena-lenkeit/neural-optimal-control

End-To-End differentiable optimal control with neural controllers

Language: Jupyter Notebook - Size: 1.81 MB - Last synced at: 11 months ago - Pushed at: 11 months ago - Stars: 0 - Forks: 0

rorevello/KNIT Fork of ProyectoAether/KNIT

Tool for automatically exploring BioPortal repositories and creating a draft knowledge graph with designated keywords.

Language: Python - Size: 575 KB - Last synced at: 10 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

futianfan/clinical-trial-outcome-prediction

benchmark dataset and Deep learning method (Hierarchical Interaction Network, HINT) for clinical trial approval probability prediction, published in Cell Patterns 2022.

Language: Python - Size: 102 MB - Last synced at: 12 months ago - Pushed at: almost 2 years ago - Stars: 84 - Forks: 21

carpentries-incubator/fair-bio-practice

FAIR in (biological) practice

Language: Jupyter Notebook - Size: 139 MB - Last synced at: 20 days ago - Pushed at: 20 days ago - Stars: 8 - Forks: 12

carpentries-incubator/fair-for-leaders

FAIR for leaders

Language: Python - Size: 27.9 MB - Last synced at: 6 days ago - Pushed at: 6 days ago - Stars: 0 - Forks: 0

lucas-lfp/heart-shaped-box__Machine-Learning-SVM-classifier

Developpement of a machine learning model (SVM classifier) for cardiovascular disease prediction. Deployed on a streamlit app.

Language: Python - Size: 7.37 MB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 1 - Forks: 0

RaquelGrosman/LINK_bhb_cortisol_2019

Programming in the Life Sciences: Work in Progress

Size: 90.8 KB - Last synced at: about 1 year ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 0

ereynrs/hclssary

Glossary of HealthCare and Life Sciences (HCLS) terms.

Size: 23.4 KB - Last synced at: about 1 year ago - Pushed at: about 1 year ago - Stars: 0 - Forks: 0

fusion-jena/QuestionsMetadataBiodiv

repository for a question corpus for the biodiversity domain, scripts for analyzing metadata in data repositories

Language: Python - Size: 109 MB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 5 - Forks: 1

elixir-uk/FAIR-Pointers

ELIXIR-UK FAIR pointers course

Language: HTML - Size: 19.8 MB - Last synced at: 5 months ago - Pushed at: almost 2 years ago - Stars: 0 - Forks: 0

amberbiology/py4lifesci

Code repository for the book "Python for the Life Sciences" by Lancaster & Webster

Language: Python - Size: 8.64 MB - Last synced at: over 1 year ago - Pushed at: almost 5 years ago - Stars: 24 - Forks: 15

aws-quickstart/quickstart-salesforce-health-cloud-virtual-care 📦

Salesforce Health Cloud Virtual Care AWS Partner Solution

Size: 2.89 MB - Last synced at: over 1 year ago - Pushed at: over 1 year ago - Stars: 4 - Forks: 3

CSCfi/beacon-python 📦

Python-based GA4GH Beacon API Server

Language: Python - Size: 6.76 MB - Last synced at: about 1 month ago - Pushed at: over 1 year ago - Stars: 8 - Forks: 4

MachineLearning-ELIXIR/dome-ml

Language: Rich Text Format - Size: 110 KB - Last synced at: about 1 year ago - Pushed at: about 4 years ago - Stars: 17 - Forks: 0

twinai/english Fork of zerostaticthemes/jekyll-serif-theme

Twin AI - Building end to end AI Health and Life Sciences Solutions

Language: SCSS - Size: 18.6 MB - Last synced at: over 1 year ago - Pushed at: over 3 years ago - Stars: 0 - Forks: 0

aws-samples/amazon-sagemaker-cell-segmentation-workshop

This workshop outlines a machine-learning cell segmentation architecture from scratch for the life-sciences vertical, using Amazon SageMaker, S3, Lambda and SageMaker Inference endpoints

Language: Jupyter Notebook - Size: 528 KB - Last synced at: almost 2 years ago - Pushed at: almost 2 years ago - Stars: 4 - Forks: 0

xtens-suite/xtens-app

A digital repository for biomedical data based on a flexible JSON data model

Language: JavaScript - Size: 4.73 MB - Last synced at: almost 2 years ago - Pushed at: over 2 years ago - Stars: 2 - Forks: 0

dbetm/computational-biology

Genetic algorithms, life game, etc.

Language: Java - Size: 6.51 MB - Last synced at: almost 2 years ago - Pushed at: almost 6 years ago - Stars: 0 - Forks: 0

wlandau/ncb2023

Short course on Bayesian methods for nonclinical statisticians: https://github.com/wlandau/ncb2023

Language: HTML - Size: 42.9 MB - Last synced at: 12 days ago - Pushed at: almost 2 years ago - Stars: 1 - Forks: 0

juliocesar-io/ariadne-federation-services

A federated GraphQL services example

Language: Python - Size: 6.84 KB - Last synced at: about 1 year ago - Pushed at: over 4 years ago - Stars: 2 - Forks: 0

NicolaZomer/Physical_Models_of_Living_Systems

Basic concepts and advanced techniques in modeling living systems

Language: Jupyter Notebook - Size: 18.6 MB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 0 - Forks: 0

mdcatapult/aurac-web-plugin

Browser plugin that can find, highlight and link to interesting life science things in web pages and PDFs.

Language: TypeScript - Size: 4.42 MB - Last synced at: 21 days ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 0

fusion-jena/daisi-semantic-search

Semantic Search Extension for Dataset Search UI [Dai:Si]

Language: TypeScript - Size: 462 KB - Last synced at: about 1 year ago - Pushed at: about 2 years ago - Stars: 2 - Forks: 0

fusion-jena/befchina-test-collection

Test collection for dataset search in biodiversity research (with a dataset corpus from BEF-China)

Size: 13.7 KB - Last synced at: about 1 year ago - Pushed at: over 2 years ago - Stars: 1 - Forks: 1

siegstedt/predict_blood_donation

This project works with data collected from the donor database of Blood Transfusion Service Center in Hsin-Chu City in Taiwan. The center passes its blood transfusion service bus to one university in Hsin-Chu City to gather blood donated about every three months. The dataset, obtained from the UCI Machine Learning Repository, consists of a random sample of 748 donors. The task is to predict if a blood donor will donate within a given time window. The work contains a full model-building process: from inspecting the dataset to using the tpot library to automate your Machine Learning pipeline.

Language: Python - Size: 23.4 KB - Last synced at: almost 2 years ago - Pushed at: over 5 years ago - Stars: 2 - Forks: 3