Ecosyste.ms: Repos

An open API service providing repository metadata for many open source software ecosystems.

GitHub topics: nih

Repositories

metamaden/gdc_download_tools

Directions and code for generic GDC data downloads.

Size: 3.23 MB - Last synced: 2 days ago - Pushed: about 6 years ago - Stars: 0 - Forks: 0

lab-rasool/MINDS

🧠 | Multimodal Integration of Oncology Data System

Language: JavaScript - Size: 3.72 MB - Last synced: 2 days ago - Pushed: 2 days ago - Stars: 3 - Forks: 0

MOSAICS-NIH/MOSAICS

A collection of tools for characterizing membrane structure and dynamics within simulated trajectories of molecular systems.

Language: C++ - Size: 414 MB - Last synced: 8 days ago - Pushed: 8 days ago - Stars: 4 - Forks: 1

aofarrel/SRANWRP

Wraps up some SRA-related utilities

Language: WDL - Size: 4.65 MB - Last synced: 13 days ago - Pushed: 13 days ago - Stars: 2 - Forks: 3

jermwatt/pynih

A Python interface for NIH Reporter APIs

Language: Jupyter Notebook - Size: 78.1 KB - Last synced: 17 days ago - Pushed: about 1 year ago - Stars: 4 - Forks: 0

arcones/sra-collector

Collect NIH NCBI SRA metadata of several GEO studies in one search

Language: Python - Size: 59.1 MB - Last synced: 26 days ago - Pushed: 26 days ago - Stars: 1 - Forks: 0

christopherBelter/qvr_processing

A function to process QVR data using R

Language: R - Size: 35.2 KB - Last synced: 29 days ago - Pushed: 29 days ago - Stars: 1 - Forks: 0

Slicer/ExtensionsIndex

Slicer extensions index

Language: Python - Size: 1.98 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 57 - Forks: 230

CBICA/CaPTk

Cancer Imaging Phenomics Toolkit (CaPTk) is a software platform to perform image analysis and predictive modeling tasks. Documentation: https://cbica.github.io/CaPTk

Language: C++ - Size: 239 MB - Last synced: 16 days ago - Pushed: 6 months ago - Stars: 169 - Forks: 63

JazzEd-EdTech/.git-violethaze74 Fork of violethaze74/lmd-jazzededtech

Language: PHP - Size: 53.9 MB - Last synced: about 1 month ago - Pushed: 3 months ago - Stars: 0 - Forks: 0

nih-sparc/data-portal 📦

Source code for NIH SPARC Data Portal

Language: Vue - Size: 7.16 MB - Last synced: about 1 month ago - Pushed: over 4 years ago - Stars: 3 - Forks: 11

FredHutch/dmshelper

✏️ A tool for composing your NIH Data Sharing Plan

Language: CSS - Size: 740 KB - Last synced: about 1 month ago - Pushed: 8 months ago - Stars: 0 - Forks: 1

Slicer/Slicer

Multi-platform, free open source software for visualization and image computing.

Language: C++ - Size: 121 MB - Last synced: about 1 month ago - Pushed: about 1 month ago - Stars: 1,459 - Forks: 502

WojciechMigda/TCO-CMap2

CMap2 Top Coder Data Science Marathon Match

Language: C++ - Size: 72.3 KB - Last synced: about 1 month ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

National-COVID-Cohort-Collaborative/short-course-2024-january

Educational material for the N3C short course, January 2024. (All assignments are contained in the secure Enclave.)

Language: R - Size: 65.6 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 2 - Forks: 4

Slicer/SlicerGitSVNArchive

:warning: OBSOLETE | Multi-platform, free open source software for visualization and image computing.

Language: C++ - Size: 448 MB - Last synced: 3 months ago - Pushed: about 2 years ago - Stars: 875 - Forks: 468

fhdsl/NIH_Data_Sharing

Learn about the new NIH data sharing policy, places where you might want to share your particular kind of data, and how to deal with possible challenges associated with the policy.

Language: CSS - Size: 76.1 MB - Last synced: about 2 months ago - Pushed: about 2 months ago - Stars: 0 - Forks: 0

hydra-billing/hyaml

Expression-oriented language with Python backend

Language: Python - Size: 170 KB - Last synced: 26 days ago - Pushed: almost 4 years ago - Stars: 5 - Forks: 0

thtang/CheXNet-with-localization

Weakly Supervised Learning for Findings Detection in Medical Images

Language: Python - Size: 174 MB - Last synced: 7 months ago - Pushed: almost 2 years ago - Stars: 306 - Forks: 108

usmannazir/ChestX

ChestX pre-trained model

Language: Jupyter Notebook - Size: 1.25 MB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 2 - Forks: 0

USCbiostats/LAsBEST

Repository of USC's LA's BEST program. https://lasbest.usc.edu/

Language: HTML - Size: 280 MB - Last synced: 7 months ago - Pushed: 10 months ago - Stars: 1 - Forks: 5

novasmedley/f31-templates

Latex templates for submitting the NIH F31 grant

Language: TeX - Size: 632 KB - Last synced: 7 months ago - Pushed: over 4 years ago - Stars: 10 - Forks: 5

arundasan91/Macular-Degeneration

Age-Related Macular Degeneration (AMD) Research using AREDS dataset provided by National Institute of Health (NIH).

Language: Python - Size: 17.6 KB - Last synced: 7 months ago - Pushed: over 5 years ago - Stars: 10 - Forks: 5

aligholami/SimpNet-Tensorflow

A Tensorflow Implementation of the SimpNet Convolutional Neural Network Architecture

Language: Python - Size: 2.29 MB - Last synced: 10 months ago - Pushed: over 5 years ago - Stars: 14 - Forks: 2

davebraze/i990-and-nih-exporter

Doodles with IRS i990 NPO data, together with NIH Exporter grant data.

Language: R - Size: 37 MB - Last synced: 10 months ago - Pushed: almost 2 years ago - Stars: 0 - Forks: 0

burkesquires/Build-a-Reproducible-Jupyter-Workflow-From-Scratch

Build a Reproducible Jupyter Workflow From Scratch (2017 NIH Hour of Code)

Language: Jupyter Notebook - Size: 5.67 MB - Last synced: 10 months ago - Pushed: over 6 years ago - Stars: 7 - Forks: 3

ScanLab-ossi/Alpha_Relevance

She is an Expert in this Research Field: The Signal of Recent Publications' Relevance

Language: Jupyter Notebook - Size: 1.16 MB - Last synced: 10 months ago - Pushed: 10 months ago - Stars: 0 - Forks: 0

crhntr/go-mesh

goMeSH is a small library for parsing MeSH data files available at https://www.nlm.nih.gov/mesh/download_mesh.html

Language: Go - Size: 850 KB - Last synced: 11 months ago - Pushed: about 7 years ago - Stars: 0 - Forks: 0

kevinmastascusa/NIHDataFetcher

"NIHDataFetcher" is a GitHub repository with scripts for accessing and fetching data from various NIH databases like GEO and PubMed. It provides code examples to retrieve GEO datasets, search PubMed, and load ClinVar data. Ideal for researchers and data scientists working with biomedical information.

Language: Python - Size: 7.81 KB - Last synced: 11 months ago - Pushed: 11 months ago - Stars: 1 - Forks: 0

rnabioco/nihexporter

An R data package for NIH EXPORTER data

Language: R - Size: 368 MB - Last synced: 15 days ago - Pushed: about 1 year ago - Stars: 12 - Forks: 13

andrewallenbruce/codexchain

:package: Programmatic Access to Medical Coding APIs

Language: R - Size: 6.26 MB - Last synced: about 1 year ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

CBICA/BrainMaGe

Brain extraction in presence of abnormalities, using single and multiple MRI modalities

Language: Python - Size: 2.34 MB - Last synced: about 1 year ago - Pushed: over 1 year ago - Stars: 26 - Forks: 7

corybrunson/NIH-proposal-template

A Markdown–Pandoc template for NIH grant proposals

Language: TeX - Size: 416 KB - Last synced: about 1 year ago - Pushed: about 2 years ago - Stars: 8 - Forks: 2

YeongHyeon/Lung_Extraction_from_CXR

Lung Extraction from Chest X-ray for Efficient Computing

Language: Python - Size: 3.54 MB - Last synced: about 1 year ago - Pushed: about 5 years ago - Stars: 14 - Forks: 3

aceat64/ppe-donations 📦

DFW PPE: Dallas-area initiative to build PPE

Size: 18.5 MB - Last synced: about 1 year ago - Pushed: about 4 years ago - Stars: 4 - Forks: 0

National-COVID-Cohort-Collaborative/short-course-2022-june

Educational material for the N3C short course, June 2022. (All assignments are contained in the secure Enclave.)

Size: 26 MB - Last synced: about 1 year ago - Pushed: almost 2 years ago - Stars: 3 - Forks: 1

christopherBelter/nih_reporter_api

R code to work with the NIH RePORTER API

Language: R - Size: 29.3 KB - Last synced: 7 months ago - Pushed: 11 months ago - Stars: 9 - Forks: 2

liuziwei7/nih-funding-visualization

NIH Funding Visualization

Language: Matlab - Size: 2.85 MB - Last synced: about 1 year ago - Pushed: almost 7 years ago - Stars: 1 - Forks: 0

gregwchase/nih-chest-xray

Identifying diseases in chest X-rays using convolutional neural networks

Language: Jupyter Notebook - Size: 10.1 MB - Last synced: about 1 year ago - Pushed: over 6 years ago - Stars: 83 - Forks: 54

JazzEd-EdTech/action-build Fork of snapcore/action-build

A Github action for building Snapcraft projects

Language: JavaScript - Size: 517 KB - Last synced: 5 days ago - Pushed: about 1 year ago - Stars: 0 - Forks: 0

Related Keywords

nih 49 deep-learning 7 python 7 r 5 medical-imaging 5 bioinformatics 4 segmentation 4 neuroimaging 4 national-institutes-of-health 4 python3 4 medical-image-computing 4 machine-learning 3 image-processing 3 rstats 3 grant-proposals 3 qt 3 nlm 3 pubmed 3 registration 3 vtk 3 chestxray14 3 informatics 3 3d-slicer 3 cross-platform 2 nih-syndrome 2 docker 2 nci 2 ncats 2 n3c 2 covid 2 tractography 2 tcia-dac 2 nodejs 2 kitware 2 itk 2 datascience 2 image-guided-therapy 2 3d-printing 2 c-plus-plus 2 pytorch 2 biomedical 2 ncbi 2 publications 2 data 2 api 2 sra 2 cancer 2 headbands-printed 1 headband 1 face-shields 1 donation-drop 1 coronavirus 1 specter 1 transformers 1 golang 1 3d-printers 1 brain-extraction 1 ppe 1 sewn-ties 1 scholarly 1 sbert 1 lda 1 workflow 1 visors 1 niaid 1 gdc 1 medlineplus 1 medical-coding 1 icd-10-cm 1 healthcare 1 hcpcs 1 spending 1 data-science 1 clinvar 1 pytorch-lightning 1 xml 1 skull-stripping 1 grant-proposal 1 markdown-template 1 pandoc-template 1 computing 1 efficient 1 extraction 1 mesh 1 lung 1 large-files 1 residual-networks 1 biosketch 1 latex-template 1 ajax 1 dom 1 html 1 javascript 1 list 1 reference 1 api-client 1 clinical-trials 1 data-mining 1 fhir 1 project-management 1

GitHub topics: nih

JazzEd-EdTech/.git-violethaze74 Fork of violethaze74/lmd-jazzededtech

nih-sparc/data-portal 📦

aceat64/ppe-donations 📦

JazzEd-EdTech/action-build Fork of snapcore/action-build

corybrunson/latex-nihbiosketch Fork of pmagwene/latex-nihbiosketch